miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6666 3' -57.3 NC_001847.1 + 116142 0.66 0.851819
Target:  5'- uGGGGCGCGCgGCccgAGGcgcuggcgGCCgcgggCGCCGc -3'
miRNA:   3'- cCCCCGCGUGaCG---UCU--------UGGaa---GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 71447 0.66 0.851819
Target:  5'- -cGGGCGCggcuuugaGCUGagcguGGACCggCACCGg -3'
miRNA:   3'- ccCCCGCG--------UGACgu---CUUGGaaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 95365 0.66 0.851819
Target:  5'- cGGGGGCugGCgGCGGA-CCgcgcCGCCGg -3'
miRNA:   3'- -CCCCCGcgUGaCGUCUuGGaa--GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 105238 0.66 0.851819
Target:  5'- aGGGGCccccCGCggcggccgGCAGGGCCgccgccUCGCCGu -3'
miRNA:   3'- cCCCCGc---GUGa-------CGUCUUGGa-----AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 2425 0.66 0.851819
Target:  5'- aGGGGCccccCGCggcggccgGCAGGGCCgccgccUCGCCGu -3'
miRNA:   3'- cCCCCGc---GUGa-------CGUCUUGGa-----AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 132678 0.66 0.851819
Target:  5'- cGGGGGCGcCGCcGCccgcucgaucgGGAGCUcgCugCGg -3'
miRNA:   3'- -CCCCCGC-GUGaCG-----------UCUUGGaaGugGC- -5'
6666 3' -57.3 NC_001847.1 + 32421 0.66 0.851819
Target:  5'- uGGGGCaGCcggggGgUGCGGGcCUUUCGCCGc -3'
miRNA:   3'- cCCCCG-CG-----UgACGUCUuGGAAGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 33016 0.66 0.851819
Target:  5'- gGGGGGCGCGCggggcgagGCGcGGACgCggCGCa- -3'
miRNA:   3'- -CCCCCGCGUGa-------CGU-CUUG-GaaGUGgc -5'
6666 3' -57.3 NC_001847.1 + 117930 0.66 0.851033
Target:  5'- uGGGGCaacguaaGCGCcGCAGAGCUgggccUgGCCGa -3'
miRNA:   3'- cCCCCG-------CGUGaCGUCUUGGa----AgUGGC- -5'
6666 3' -57.3 NC_001847.1 + 86990 0.66 0.84387
Target:  5'- cGGGccGGCGCGCgccggcccgGCGGuuACCUggGCCGc -3'
miRNA:   3'- -CCC--CCGCGUGa--------CGUCu-UGGAagUGGC- -5'
6666 3' -57.3 NC_001847.1 + 28882 0.66 0.84387
Target:  5'- uGGGGCGagUUGCAGAGCaCgcggcCGCCGu -3'
miRNA:   3'- cCCCCGCguGACGUCUUG-Gaa---GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 83321 0.66 0.84387
Target:  5'- cGGGGGCGCuugGC---GCCUcCAUCGa -3'
miRNA:   3'- -CCCCCGCGugaCGucuUGGAaGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 82885 0.66 0.84387
Target:  5'- -cGGGCGCGCcGCAGccaAGCCgcggCGCgCGg -3'
miRNA:   3'- ccCCCGCGUGaCGUC---UUGGaa--GUG-GC- -5'
6666 3' -57.3 NC_001847.1 + 107003 0.66 0.84387
Target:  5'- --cGGCGuCGCUGCAGu-CCUcgggcccaacgUCGCCGg -3'
miRNA:   3'- cccCCGC-GUGACGUCuuGGA-----------AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 8632 0.66 0.84387
Target:  5'- gGGGGaGCGgcCGCUGCGGAcUCgggCGCCc -3'
miRNA:   3'- -CCCC-CGC--GUGACGUCUuGGaa-GUGGc -5'
6666 3' -57.3 NC_001847.1 + 4190 0.66 0.84387
Target:  5'- --cGGCGuCGCUGCAGu-CCUcgggcccaacgUCGCCGg -3'
miRNA:   3'- cccCCGC-GUGACGUCuuGGA-----------AGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 33906 0.66 0.843065
Target:  5'- cGGGcGUGCAggaccgcCUGUGGcAGCCUUCgGCCGg -3'
miRNA:   3'- cCCC-CGCGU-------GACGUC-UUGGAAG-UGGC- -5'
6666 3' -57.3 NC_001847.1 + 101084 0.66 0.843065
Target:  5'- cGGGGGCcgggucgGCGggGCGGGcgggcGCgUUCGCCGu -3'
miRNA:   3'- -CCCCCG-------CGUgaCGUCU-----UGgAAGUGGC- -5'
6666 3' -57.3 NC_001847.1 + 81689 0.66 0.841448
Target:  5'- cGGGcgagugcucgcugcGCGCGCUGCGGcACgCgcgCGCCGa -3'
miRNA:   3'- cCCC--------------CGCGUGACGUCuUG-Gaa-GUGGC- -5'
6666 3' -57.3 NC_001847.1 + 123037 0.66 0.835731
Target:  5'- cGGGGGC-CGCUGgaAGuacGGCCgcgggCGCCGg -3'
miRNA:   3'- -CCCCCGcGUGACg-UC---UUGGaa---GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.