Results 1 - 20 of 315 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6669 | 3' | -70.4 | NC_001847.1 | + | 32987 | 0.66 | 0.316265 |
Target: 5'- cCGGGGCGGGcaGgGCgGCCggaGCGGcCg -3' miRNA: 3'- -GCCCCGCCC--CgCGgCGGgg-CGCCaGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 85364 | 0.66 | 0.316265 |
Target: 5'- gGGGGCGuGGcaaGCGUCGCCagCGCGuUCa -3' miRNA: 3'- gCCCCGC-CC---CGCGGCGGg-GCGCcAGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 132702 | 0.66 | 0.316265 |
Target: 5'- aCGGcgaGGCGGcGGCccuGCCgGCCgCCGCGGg-- -3' miRNA: 3'- -GCC---CCGCC-CCG---CGG-CGG-GGCGCCaga -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 29889 | 0.66 | 0.316265 |
Target: 5'- aCGGcgaGGCGGcGGCccuGCCgGCCgCCGCGGg-- -3' miRNA: 3'- -GCC---CCGCC-CCG---CGG-CGG-GGCGCCaga -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 120930 | 0.66 | 0.316265 |
Target: 5'- gCGGGGCGGGcGCGCgGgCgUgGUGG-CUg -3' miRNA: 3'- -GCCCCGCCC-CGCGgC-GgGgCGCCaGA- -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 132497 | 0.66 | 0.316265 |
Target: 5'- -cGGGCGaaGGCGCCGCaagcggcgaCgGCGGUCc -3' miRNA: 3'- gcCCCGCc-CCGCGGCGg--------GgCGCCAGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 31460 | 0.66 | 0.316265 |
Target: 5'- uCGuGGGCGccauGGGCGUcggugucuuucgCGCCggcgaCGCGGUCUa -3' miRNA: 3'- -GC-CCCGC----CCCGCG------------GCGGg----GCGCCAGA- -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 2885 | 0.66 | 0.315606 |
Target: 5'- uCGGGcCGGGuGCGUCGCCguucgggCCGgaCGGUCg -3' miRNA: 3'- -GCCCcGCCC-CGCGGCGG-------GGC--GCCAGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 101635 | 0.66 | 0.315606 |
Target: 5'- cCGcGGCGGcGcccgccgccgcccGCGCCGCCgCCGCGGa-- -3' miRNA: 3'- -GCcCCGCC-C-------------CGCGGCGG-GGCGCCaga -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 93305 | 0.66 | 0.312323 |
Target: 5'- aGGGGgacgugccccagcccUGGGacccGCGCCGCCCgcccgCGCGGUg- -3' miRNA: 3'- gCCCC---------------GCCC----CGCGGCGGG-----GCGCCAga -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 27495 | 0.66 | 0.309716 |
Target: 5'- uCGGcGGCaGaGGCcucgGCCGCCgCCGCGG-Cg -3' miRNA: 3'- -GCC-CCGcC-CCG----CGGCGG-GGCGCCaGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 130861 | 0.66 | 0.309716 |
Target: 5'- cCGaGGCGGGGgCGgCGCCCCucaaggccgaaGCGGg-- -3' miRNA: 3'- -GCcCCGCCCC-GCgGCGGGG-----------CGCCaga -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 67840 | 0.66 | 0.309716 |
Target: 5'- gCGGGGCugccGGCGCUGgCgCGCGGcUCg -3' miRNA: 3'- -GCCCCGcc--CCGCGGCgGgGCGCC-AGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 11498 | 0.66 | 0.309716 |
Target: 5'- uGGcucaGGCGccuucagccaaGGGCGCCGCCCCGgcCGaGUUUg -3' miRNA: 3'- gCC----CCGC-----------CCCGCGGCGGGGC--GC-CAGA- -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 105568 | 0.66 | 0.309716 |
Target: 5'- cCGGcGCGGcGGCGCCGgcgccggcgcCCCCGcCGG-Cg -3' miRNA: 3'- -GCCcCGCC-CCGCGGC----------GGGGC-GCCaGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 134270 | 0.66 | 0.309716 |
Target: 5'- cCGGcGCGGGcCGCCGCCgCGCGuGg-- -3' miRNA: 3'- -GCCcCGCCCcGCGGCGGgGCGC-Caga -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 6961 | 0.66 | 0.309716 |
Target: 5'- gCGGGGuCGcGGCGgCGCuuccgCCCGCGGg-- -3' miRNA: 3'- -GCCCC-GCcCCGCgGCG-----GGGCGCCaga -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 70374 | 0.66 | 0.309716 |
Target: 5'- gGGGGCgccGGGGCGCgaGCUCgCGCuGGcCa -3' miRNA: 3'- gCCCCG---CCCCGCGg-CGGG-GCG-CCaGa -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 61944 | 0.66 | 0.309716 |
Target: 5'- ---aGCGGcGGCGCgGCCCgCGCGGg-- -3' miRNA: 3'- gcccCGCC-CCGCGgCGGG-GCGCCaga -5' |
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6669 | 3' | -70.4 | NC_001847.1 | + | 73117 | 0.66 | 0.309716 |
Target: 5'- gGGuGGCGGaGGUaGCCGCCgugcUCGCGGa-- -3' miRNA: 3'- gCC-CCGCC-CCG-CGGCGG----GGCGCCaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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