miRNA display CGI


Results 1 - 20 of 315 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6669 3' -70.4 NC_001847.1 + 85364 0.66 0.316265
Target:  5'- gGGGGCGuGGcaaGCGUCGCCagCGCGuUCa -3'
miRNA:   3'- gCCCCGC-CC---CGCGGCGGg-GCGCcAGa -5'
6669 3' -70.4 NC_001847.1 + 132702 0.66 0.316265
Target:  5'- aCGGcgaGGCGGcGGCccuGCCgGCCgCCGCGGg-- -3'
miRNA:   3'- -GCC---CCGCC-CCG---CGG-CGG-GGCGCCaga -5'
6669 3' -70.4 NC_001847.1 + 132497 0.66 0.316265
Target:  5'- -cGGGCGaaGGCGCCGCaagcggcgaCgGCGGUCc -3'
miRNA:   3'- gcCCCGCc-CCGCGGCGg--------GgCGCCAGa -5'
6669 3' -70.4 NC_001847.1 + 120930 0.66 0.316265
Target:  5'- gCGGGGCGGGcGCGCgGgCgUgGUGG-CUg -3'
miRNA:   3'- -GCCCCGCCC-CGCGgC-GgGgCGCCaGA- -5'
6669 3' -70.4 NC_001847.1 + 29889 0.66 0.316265
Target:  5'- aCGGcgaGGCGGcGGCccuGCCgGCCgCCGCGGg-- -3'
miRNA:   3'- -GCC---CCGCC-CCG---CGG-CGG-GGCGCCaga -5'
6669 3' -70.4 NC_001847.1 + 31460 0.66 0.316265
Target:  5'- uCGuGGGCGccauGGGCGUcggugucuuucgCGCCggcgaCGCGGUCUa -3'
miRNA:   3'- -GC-CCCGC----CCCGCG------------GCGGg----GCGCCAGA- -5'
6669 3' -70.4 NC_001847.1 + 32987 0.66 0.316265
Target:  5'- cCGGGGCGGGcaGgGCgGCCggaGCGGcCg -3'
miRNA:   3'- -GCCCCGCCC--CgCGgCGGgg-CGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 101635 0.66 0.315606
Target:  5'- cCGcGGCGGcGcccgccgccgcccGCGCCGCCgCCGCGGa-- -3'
miRNA:   3'- -GCcCCGCC-C-------------CGCGGCGG-GGCGCCaga -5'
6669 3' -70.4 NC_001847.1 + 2885 0.66 0.315606
Target:  5'- uCGGGcCGGGuGCGUCGCCguucgggCCGgaCGGUCg -3'
miRNA:   3'- -GCCCcGCCC-CGCGGCGG-------GGC--GCCAGa -5'
6669 3' -70.4 NC_001847.1 + 93305 0.66 0.312323
Target:  5'- aGGGGgacgugccccagcccUGGGacccGCGCCGCCCgcccgCGCGGUg- -3'
miRNA:   3'- gCCCC---------------GCCC----CGCGGCGGG-----GCGCCAga -5'
6669 3' -70.4 NC_001847.1 + 134270 0.66 0.309716
Target:  5'- cCGGcGCGGGcCGCCGCCgCGCGuGg-- -3'
miRNA:   3'- -GCCcCGCCCcGCGGCGGgGCGC-Caga -5'
6669 3' -70.4 NC_001847.1 + 105568 0.66 0.309716
Target:  5'- cCGGcGCGGcGGCGCCGgcgccggcgcCCCCGcCGG-Cg -3'
miRNA:   3'- -GCCcCGCC-CCGCGGC----------GGGGC-GCCaGa -5'
6669 3' -70.4 NC_001847.1 + 11498 0.66 0.309716
Target:  5'- uGGcucaGGCGccuucagccaaGGGCGCCGCCCCGgcCGaGUUUg -3'
miRNA:   3'- gCC----CCGC-----------CCCGCGGCGGGGC--GC-CAGA- -5'
6669 3' -70.4 NC_001847.1 + 67840 0.66 0.309716
Target:  5'- gCGGGGCugccGGCGCUGgCgCGCGGcUCg -3'
miRNA:   3'- -GCCCCGcc--CCGCGGCgGgGCGCC-AGa -5'
6669 3' -70.4 NC_001847.1 + 130861 0.66 0.309716
Target:  5'- cCGaGGCGGGGgCGgCGCCCCucaaggccgaaGCGGg-- -3'
miRNA:   3'- -GCcCCGCCCC-GCgGCGGGG-----------CGCCaga -5'
6669 3' -70.4 NC_001847.1 + 27495 0.66 0.309716
Target:  5'- uCGGcGGCaGaGGCcucgGCCGCCgCCGCGG-Cg -3'
miRNA:   3'- -GCC-CCGcC-CCG----CGGCGG-GGCGCCaGa -5'
6669 3' -70.4 NC_001847.1 + 6961 0.66 0.309716
Target:  5'- gCGGGGuCGcGGCGgCGCuuccgCCCGCGGg-- -3'
miRNA:   3'- -GCCCC-GCcCCGCgGCG-----GGGCGCCaga -5'
6669 3' -70.4 NC_001847.1 + 70374 0.66 0.309716
Target:  5'- gGGGGCgccGGGGCGCgaGCUCgCGCuGGcCa -3'
miRNA:   3'- gCCCCG---CCCCGCGg-CGGG-GCG-CCaGa -5'
6669 3' -70.4 NC_001847.1 + 61944 0.66 0.309716
Target:  5'- ---aGCGGcGGCGCgGCCCgCGCGGg-- -3'
miRNA:   3'- gcccCGCC-CCGCGgCGGG-GCGCCaga -5'
6669 3' -70.4 NC_001847.1 + 73117 0.66 0.309716
Target:  5'- gGGuGGCGGaGGUaGCCGCCgugcUCGCGGa-- -3'
miRNA:   3'- gCC-CCGCC-CCG-CGGCGG----GGCGCCaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.