miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6669 5' -53.1 NC_001847.1 + 134075 0.66 0.962563
Target:  5'- cGUGGACUGGgacgCGGAccAGGGC-CCGCg -3'
miRNA:   3'- -CAUCUGGUCg---GCCUuuUCCUGuGGUG- -5'
6669 5' -53.1 NC_001847.1 + 79821 0.66 0.962563
Target:  5'- cGUGGcCCGcuGCCGGAAGuGGcgACCGCg -3'
miRNA:   3'- -CAUCuGGU--CGGCCUUUuCCugUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 2426 0.66 0.962563
Target:  5'- -gGGGCCccccgcggcGGCCGGc-AGGGcCGCCGCc -3'
miRNA:   3'- caUCUGG---------UCGGCCuuUUCCuGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 31262 0.66 0.962563
Target:  5'- cGUGGACUGGgacgCGGAccAGGGC-CCGCg -3'
miRNA:   3'- -CAUCUGGUCg---GCCUuuUCCUGuGGUG- -5'
6669 5' -53.1 NC_001847.1 + 105239 0.66 0.962563
Target:  5'- -gGGGCCccccgcggcGGCCGGc-AGGGcCGCCGCc -3'
miRNA:   3'- caUCUGG---------UCGGCCuuUUCCuGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 88552 0.66 0.962563
Target:  5'- -gAGGCCGcGCCGGcgGGGcuGACGCCcgGCg -3'
miRNA:   3'- caUCUGGU-CGGCCuuUUC--CUGUGG--UG- -5'
6669 5' -53.1 NC_001847.1 + 3260 0.66 0.962208
Target:  5'- -gAGACCAGuuccaauCCGGcaAAGAGGGCGacgugaacCCACg -3'
miRNA:   3'- caUCUGGUC-------GGCC--UUUUCCUGU--------GGUG- -5'
6669 5' -53.1 NC_001847.1 + 122882 0.66 0.958899
Target:  5'- uUGGACUcGCgGGAcugguGGGCAUCGCa -3'
miRNA:   3'- cAUCUGGuCGgCCUuuu--CCUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 46221 0.66 0.958899
Target:  5'- -cGGGCCGGCCGcGggGAaaucucGCACCAg -3'
miRNA:   3'- caUCUGGUCGGC-CuuUUcc----UGUGGUg -5'
6669 5' -53.1 NC_001847.1 + 14537 0.66 0.958899
Target:  5'- -gAGuACCGGCUGGAGuauGAccGCGCCGCa -3'
miRNA:   3'- caUC-UGGUCGGCCUU---UUccUGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 123039 0.66 0.958899
Target:  5'- -gGGGCC-GCUGGAAGuacggccgcGGGCGCCGg -3'
miRNA:   3'- caUCUGGuCGGCCUUUu--------CCUGUGGUg -5'
6669 5' -53.1 NC_001847.1 + 118812 0.66 0.958899
Target:  5'- -cAGGCCGuGCCGGucgucuAGGGCGCgGa -3'
miRNA:   3'- caUCUGGU-CGGCCuuu---UCCUGUGgUg -5'
6669 5' -53.1 NC_001847.1 + 19611 0.66 0.954995
Target:  5'- -cGGGCCcgAGCuCGGGcccGGGGCGCCGg -3'
miRNA:   3'- caUCUGG--UCG-GCCUuu-UCCUGUGGUg -5'
6669 5' -53.1 NC_001847.1 + 54533 0.66 0.954995
Target:  5'- -gGGGCCGuCCGGggGcgcagacggcgGGGGCGgCGCg -3'
miRNA:   3'- caUCUGGUcGGCCuuU-----------UCCUGUgGUG- -5'
6669 5' -53.1 NC_001847.1 + 115941 0.66 0.954995
Target:  5'- -gGGaACgAGCaGGGAGGGGuCGCCGCu -3'
miRNA:   3'- caUC-UGgUCGgCCUUUUCCuGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 125448 0.66 0.954995
Target:  5'- --uGGCUGGCCGGAGGAcGGGCGgguCgGCg -3'
miRNA:   3'- cauCUGGUCGGCCUUUU-CCUGU---GgUG- -5'
6669 5' -53.1 NC_001847.1 + 34356 0.66 0.954591
Target:  5'- ----cCCGGCCGGGagaGAAGGccagcgaGCGCCAUg -3'
miRNA:   3'- caucuGGUCGGCCU---UUUCC-------UGUGGUG- -5'
6669 5' -53.1 NC_001847.1 + 130932 0.66 0.950847
Target:  5'- -aGGACCgaGGCCGGcGAcguugggcccGAGGACugCAg -3'
miRNA:   3'- caUCUGG--UCGGCC-UU----------UUCCUGugGUg -5'
6669 5' -53.1 NC_001847.1 + 129321 0.66 0.950847
Target:  5'- -cGGGCCuGCCGGGcgcGGGGCcgggggcguucgGCCAUg -3'
miRNA:   3'- caUCUGGuCGGCCUuu-UCCUG------------UGGUG- -5'
6669 5' -53.1 NC_001847.1 + 133990 0.66 0.950847
Target:  5'- --cGGCCGcgcuGCCGGAGccgcgcgccGAGG-CGCCGCc -3'
miRNA:   3'- cauCUGGU----CGGCCUU---------UUCCuGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.