Results 1 - 20 of 459 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 59319 | 0.65 | 0.475198 |
Target: 5'- gGCGcgGcGCC-GGCgGCGCCGUaccagcccggcaucGGGGGc -3' miRNA: 3'- -CGCuaC-CGGcCCGgCGCGGCG--------------CCCUC- -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 104530 | 0.66 | 0.426342 |
Target: 5'- aCGAUcaGCCGccGCCGCGCCGCGGc-- -3' miRNA: 3'- cGCUAc-CGGCc-CGGCGCGGCGCCcuc -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 42599 | 0.66 | 0.44315 |
Target: 5'- gGgGGUGGUgacaGGGaCgGCGCCGcCGcGGAGg -3' miRNA: 3'- -CgCUACCGg---CCC-GgCGCGGC-GC-CCUC- -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 68971 | 0.66 | 0.44315 |
Target: 5'- gGgGgcGGCCGGcGCCa-GCC-CGGGAGa -3' miRNA: 3'- -CgCuaCCGGCC-CGGcgCGGcGCCCUC- -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 35900 | 0.66 | 0.434699 |
Target: 5'- gGCGgcGGCgUGGGaCgGCG-CGUGGGAGc -3' miRNA: 3'- -CGCuaCCG-GCCC-GgCGCgGCGCCCUC- -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 18203 | 0.66 | 0.450835 |
Target: 5'- gGCGAggucucgGGCUGgcggucucucggcGGUCGUGCgCGCGGGuGg -3' miRNA: 3'- -CGCUa------CCGGC-------------CCGGCGCG-GCGCCCuC- -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 87670 | 0.66 | 0.450835 |
Target: 5'- uGCGccgcAUGGcCCGGGCgCuggggcugcugcgGCGCCGCGGcGGc -3' miRNA: 3'- -CGC----UACC-GGCCCG-G-------------CGCGGCGCC-CUc -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 69264 | 0.66 | 0.434699 |
Target: 5'- cGCGGcUGGCgGcGGCCGCGggcuuccucuaCGCGGGc- -3' miRNA: 3'- -CGCU-ACCGgC-CCGGCGCg----------GCGCCCuc -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 104224 | 0.66 | 0.44315 |
Target: 5'- cGCGgcGGCaCGGGCacCGCGgUGCGcGGGc -3' miRNA: 3'- -CGCuaCCG-GCCCG--GCGCgGCGC-CCUc -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 125747 | 0.66 | 0.44315 |
Target: 5'- gGCug-GGCUGGGCUGgGCUGgGGuGGGc -3' miRNA: 3'- -CGcuaCCGGCCCGGCgCGGCgCC-CUC- -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 77222 | 0.66 | 0.434699 |
Target: 5'- cGCGGgccGCCGGGCCcggacuugGCGCggucgCGCGGGc- -3' miRNA: 3'- -CGCUac-CGGCCCGG--------CGCG-----GCGCCCuc -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 100518 | 0.66 | 0.434699 |
Target: 5'- uGUGGUGGgcugCGGGUCGCGgaGUGGGuGg -3' miRNA: 3'- -CGCUACCg---GCCCGGCGCggCGCCCuC- -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 20273 | 0.66 | 0.451693 |
Target: 5'- gGCGA-GGUCGGcGCCGCG-CGUcGGAa -3' miRNA: 3'- -CGCUaCCGGCC-CGGCGCgGCGcCCUc -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 47561 | 0.66 | 0.434699 |
Target: 5'- cGCGggGaGCCcggcGGCCGCGCaCGCGccGAGg -3' miRNA: 3'- -CGCuaC-CGGc---CCGGCGCG-GCGCc-CUC- -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 86039 | 0.66 | 0.426342 |
Target: 5'- uGCGcUGGuuGGGCgagGCGCUGgGGGc- -3' miRNA: 3'- -CGCuACCggCCCGg--CGCGGCgCCCuc -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 81022 | 0.66 | 0.44315 |
Target: 5'- aGCGcAUGGgCGacgccGCCGCGgaCUGCGGGGGc -3' miRNA: 3'- -CGC-UACCgGCc----CGGCGC--GGCGCCCUC- -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 125807 | 0.66 | 0.44315 |
Target: 5'- gGCug-GGCUGGGCUGgGCUGgGGuGGGc -3' miRNA: 3'- -CGcuaCCGGCCCGGCgCGGCgCC-CUC- -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 37032 | 0.66 | 0.426342 |
Target: 5'- cGCGGaccUGGUCGuGGCCGCGCUcaUGGGc- -3' miRNA: 3'- -CGCU---ACCGGC-CCGGCGCGGc-GCCCuc -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 34769 | 0.66 | 0.434699 |
Target: 5'- cGCGGcUGcgcGCCGcGGCCGCGgCGCGcGGc- -3' miRNA: 3'- -CGCU-AC---CGGC-CCGGCGCgGCGC-CCuc -5' |
|||||||
6670 | 3' | -66.1 | NC_001847.1 | + | 124723 | 0.66 | 0.44315 |
Target: 5'- -aGAcGGCCGaGGCCGCGggcgagGCGGaGAGa -3' miRNA: 3'- cgCUaCCGGC-CCGGCGCgg----CGCC-CUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home