miRNA display CGI


Results 21 - 40 of 459 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 3' -66.1 NC_001847.1 + 1411 0.66 0.44315
Target:  5'- cGCGgcGGCaCGGGCacCGCGgUGCGcGGGc -3'
miRNA:   3'- -CGCuaCCG-GCCCG--GCGCgGCGC-CCUc -5'
6670 3' -66.1 NC_001847.1 + 71380 0.66 0.44315
Target:  5'- cGCGGUcuccgGGCCuGGcCCGCGCCGCcaGGcGGc -3'
miRNA:   3'- -CGCUA-----CCGGcCC-GGCGCGGCG--CC-CUc -5'
6670 3' -66.1 NC_001847.1 + 100327 0.66 0.459459
Target:  5'- aGCGcccGGUCGGccuGCCGCgccagcgGCCGCGGGu- -3'
miRNA:   3'- -CGCua-CCGGCC---CGGCG-------CGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 107191 0.66 0.469045
Target:  5'- aGCGA--GCUGGGCC-CGgaCGCGaGGAGg -3'
miRNA:   3'- -CGCUacCGGCCCGGcGCg-GCGC-CCUC- -5'
6670 3' -66.1 NC_001847.1 + 50365 0.66 0.425511
Target:  5'- gGCGcUGGCCGGcGUCGCccugcugGCCGUGGc-- -3'
miRNA:   3'- -CGCuACCGGCC-CGGCG-------CGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 61982 0.66 0.434699
Target:  5'- cGCGGcgGGCauaauGGGCCcgaagaGCGgCGCGGGGc -3'
miRNA:   3'- -CGCUa-CCGg----CCCGG------CGCgGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 52893 0.66 0.449121
Target:  5'- gGCGAUGGCCaguccuagguccgcGGGCaGCGgCuCGGGGc -3'
miRNA:   3'- -CGCUACCGG--------------CCCGgCGCgGcGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 4337 0.66 0.469045
Target:  5'- ----cGGCCGcGGCCGCcuccgccccgGCCGCGGc-- -3'
miRNA:   3'- cgcuaCCGGC-CCGGCG----------CGGCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 127336 0.66 0.442301
Target:  5'- cCGAggcGGCCGGcuGCCGCggcagggGCgGCGGGGc -3'
miRNA:   3'- cGCUa--CCGGCC--CGGCG-------CGgCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 28868 0.66 0.469045
Target:  5'- cGCcAUGGCCGcGCagaaCGCGCUGUGGGc- -3'
miRNA:   3'- -CGcUACCGGCcCG----GCGCGGCGCCCuc -5'
6670 3' -66.1 NC_001847.1 + 109923 0.66 0.446556
Target:  5'- cGCGAc-GCCGaucaugcucuuugccGGCCGCG-CGCGGGGc -3'
miRNA:   3'- -CGCUacCGGC---------------CCGGCGCgGCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 96332 0.66 0.44315
Target:  5'- nGCaAUGGCgGGGCCG-GCgGCGGc-- -3'
miRNA:   3'- -CGcUACCGgCCCGGCgCGgCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 108070 0.66 0.451693
Target:  5'- aGCGugGGCgCGGuGCCGC-CCGgGGGGc -3'
miRNA:   3'- -CGCuaCCG-GCC-CGGCGcGGCgCCCUc -5'
6670 3' -66.1 NC_001847.1 + 125492 0.66 0.451693
Target:  5'- cGCGAggacgcccGGCugcucgagcggCGGGCCgGCGCgGCGGcGGGc -3'
miRNA:   3'- -CGCUa-------CCG-----------GCCCGG-CGCGgCGCC-CUC- -5'
6670 3' -66.1 NC_001847.1 + 99203 0.66 0.460325
Target:  5'- cGCGA-GGC--GGCCGCGCgGCGGc-- -3'
miRNA:   3'- -CGCUaCCGgcCCGGCGCGgCGCCcuc -5'
6670 3' -66.1 NC_001847.1 + 115493 0.66 0.468169
Target:  5'- cCGgcGGCCGGGCCcgcaagcggccgcGCGCCGacgccggcgcccCGGGc- -3'
miRNA:   3'- cGCuaCCGGCCCGG-------------CGCGGC------------GCCCuc -5'
6670 3' -66.1 NC_001847.1 + 67567 0.67 0.41726
Target:  5'- gGCGGUucGCCGaGGCuuuggccCGCGCCGaucuGGGAGa -3'
miRNA:   3'- -CGCUAc-CGGC-CCG-------GCGCGGCg---CCCUC- -5'
6670 3' -66.1 NC_001847.1 + 132671 0.67 0.418081
Target:  5'- aCGgcGGCgGGGgCGcCGCCGCccgcucgaucGGGAGc -3'
miRNA:   3'- cGCuaCCGgCCCgGC-GCGGCG----------CCCUC- -5'
6670 3' -66.1 NC_001847.1 + 74160 0.66 0.426342
Target:  5'- uCGAcGGCgccgUGGGCgCGCGCaGCGGGGa -3'
miRNA:   3'- cGCUaCCG----GCCCG-GCGCGgCGCCCUc -5'
6670 3' -66.1 NC_001847.1 + 130184 0.66 0.434699
Target:  5'- cGCGGgcgcccGGCCugaagagacGGGCgGCGCggagggCGCGGGAa -3'
miRNA:   3'- -CGCUa-----CCGG---------CCCGgCGCG------GCGCCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.