miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6670 5' -54.7 NC_001847.1 + 101317 0.71 0.71005
Target:  5'- gCGCgCCCGCGucuGCGcACAGccgcUCCAGCg -3'
miRNA:   3'- -GCGaGGGCGUu--UGCaUGUC----AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 101278 0.7 0.730264
Target:  5'- gCGcCUCCUGCAAgaagcGCGcGCAGUCCucuGCg -3'
miRNA:   3'- -GC-GAGGGCGUU-----UGCaUGUCAGGu--CGa -5'
6670 5' -54.7 NC_001847.1 + 99579 0.7 0.727252
Target:  5'- cCGCUCCaaaGCGcgcacgccaagcuuGGCGcggggcUGCAGUCCGGCg -3'
miRNA:   3'- -GCGAGGg--CGU--------------UUGC------AUGUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 99477 0.68 0.844737
Target:  5'- cCGCUUgcgucacgacgucggCCGCcgAGGCGgcGCGGUCCAGCg -3'
miRNA:   3'- -GCGAG---------------GGCG--UUUGCa-UGUCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 98670 0.69 0.788476
Target:  5'- aCGCgCCCGCGcAgGUGCAgGUCCcGCUc -3'
miRNA:   3'- -GCGaGGGCGUuUgCAUGU-CAGGuCGA- -5'
6670 5' -54.7 NC_001847.1 + 97433 0.68 0.83306
Target:  5'- gCGCgCCCaGCAGcagcgcgcACGUGacgaGGUCCAGCg -3'
miRNA:   3'- -GCGaGGG-CGUU--------UGCAUg---UCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 95980 0.66 0.913327
Target:  5'- cCGCUgCCGCGGcUGcGCGG-CCGGCa -3'
miRNA:   3'- -GCGAgGGCGUUuGCaUGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 94086 0.69 0.788476
Target:  5'- gCGCggccagCCCGCccagcauccaGGACGUGCAGUUCcGCg -3'
miRNA:   3'- -GCGa-----GGGCG----------UUUGCAUGUCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 94034 0.72 0.658478
Target:  5'- gGCUUCCGCGccaaccACGUGCAGgCgCAGCUg -3'
miRNA:   3'- gCGAGGGCGUu-----UGCAUGUCaG-GUCGA- -5'
6670 5' -54.7 NC_001847.1 + 93786 0.68 0.8576
Target:  5'- gCGCUCUcggcgCGCAAgcGCGUGCGG-CaCAGCg -3'
miRNA:   3'- -GCGAGG-----GCGUU--UGCAUGUCaG-GUCGa -5'
6670 5' -54.7 NC_001847.1 + 90620 0.72 0.637631
Target:  5'- cCGCgagCUCGCGGACG-GCGG-CCAGCUc -3'
miRNA:   3'- -GCGa--GGGCGUUUGCaUGUCaGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 89590 0.66 0.907192
Target:  5'- aGC-CCCGCcuGCGUGCgcgGGcUCUGGCUg -3'
miRNA:   3'- gCGaGGGCGuuUGCAUG---UC-AGGUCGA- -5'
6670 5' -54.7 NC_001847.1 + 86363 0.67 0.880237
Target:  5'- gGCgCCCGCAGACGagGCGG-CgGGCc -3'
miRNA:   3'- gCGaGGGCGUUUGCa-UGUCaGgUCGa -5'
6670 5' -54.7 NC_001847.1 + 83773 0.69 0.805909
Target:  5'- gGCcUCCGCGAGCGUcaccgucACGGUCC-GCg -3'
miRNA:   3'- gCGaGGGCGUUUGCA-------UGUCAGGuCGa -5'
6670 5' -54.7 NC_001847.1 + 82843 0.69 0.779084
Target:  5'- uCGUUUgCCGCGcGGCGUAC-GUCCGGCa -3'
miRNA:   3'- -GCGAG-GGCGU-UUGCAUGuCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 82590 0.66 0.924858
Target:  5'- aGCUCUCGCAGcAUGU-CGGccgcgcccUCCGGCg -3'
miRNA:   3'- gCGAGGGCGUU-UGCAuGUC--------AGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 82317 0.67 0.880237
Target:  5'- gGCgCCCGCgAAACGcccgaGGUCCAGUg -3'
miRNA:   3'- gCGaGGGCG-UUUGCaug--UCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 81892 0.68 0.849623
Target:  5'- gCGC-CCCGCcgAGGCGgcgccGCAG-CCAGCg -3'
miRNA:   3'- -GCGaGGGCG--UUUGCa----UGUCaGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 81811 0.66 0.924858
Target:  5'- uCGCuUUCCGCugcGGCGUGguccaggcgaGGUCCAGCg -3'
miRNA:   3'- -GCG-AGGGCGu--UUGCAUg---------UCAGGUCGa -5'
6670 5' -54.7 NC_001847.1 + 80953 0.68 0.865366
Target:  5'- aGCUugUCCGCGAGCGcGCGGUCaaaguGCUc -3'
miRNA:   3'- gCGA--GGGCGUUUGCaUGUCAGgu---CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.