miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6672 3' -44.2 NC_001847.1 + 134030 0.67 0.999984
Target:  5'- ----gGUGCUggaGGCCG-CGGCGGCGc -3'
miRNA:   3'- cuaaaUAUGAa--CCGGCaGUUGUUGCu -5'
6672 3' -44.2 NC_001847.1 + 126597 0.67 0.999984
Target:  5'- -----------cGCCGUCGACGACGAc -3'
miRNA:   3'- cuaaauaugaacCGGCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 126447 0.7 0.999627
Target:  5'- ------aGCcgUGGCCGUCGGCAucguCGAc -3'
miRNA:   3'- cuaaauaUGa-ACCGGCAGUUGUu---GCU- -5'
6672 3' -44.2 NC_001847.1 + 123448 0.7 0.999404
Target:  5'- gGGUUUGccggGCUUGGCC--CGGCGACGGc -3'
miRNA:   3'- -CUAAAUa---UGAACCGGcaGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 121475 0.71 0.998291
Target:  5'- ----cGUACUcGGCCaUCAGCAGCGu -3'
miRNA:   3'- cuaaaUAUGAaCCGGcAGUUGUUGCu -5'
6672 3' -44.2 NC_001847.1 + 119247 0.75 0.974601
Target:  5'- ------cAUggGGCCGUCGAUAGCGAg -3'
miRNA:   3'- cuaaauaUGaaCCGGCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 119127 0.72 0.996439
Target:  5'- ------cAUggGGCCGUCGAUGGCGAg -3'
miRNA:   3'- cuaaauaUGaaCCGGCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 116073 0.69 0.999867
Target:  5'- ------aGCggGGCCGaCGACGGCGAc -3'
miRNA:   3'- cuaaauaUGaaCCGGCaGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 115841 1.11 0.028752
Target:  5'- gGAUUUAUACUUGGCCGUCAACAACGAg -3'
miRNA:   3'- -CUAAAUAUGAACCGGCAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 114593 0.66 0.999997
Target:  5'- ---gUGUACgUGGCCGUCccCGcCGAg -3'
miRNA:   3'- cuaaAUAUGaACCGGCAGuuGUuGCU- -5'
6672 3' -44.2 NC_001847.1 + 110153 0.69 0.999899
Target:  5'- cGAUg---GCcaUGGCCaUCAACAGCGAc -3'
miRNA:   3'- -CUAaauaUGa-ACCGGcAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 108541 0.72 0.997505
Target:  5'- ------cACgUGGCCGUCAGCAagcuuaACGAa -3'
miRNA:   3'- cuaaauaUGaACCGGCAGUUGU------UGCU- -5'
6672 3' -44.2 NC_001847.1 + 96292 0.68 0.999958
Target:  5'- ----cGUACUcggGGCCGgcggCGGCAAUGGc -3'
miRNA:   3'- cuaaaUAUGAa--CCGGCa---GUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 95899 0.66 0.999998
Target:  5'- ------aGCUcgagaUGGCUGUCAGCGuCGAc -3'
miRNA:   3'- cuaaauaUGA-----ACCGGCAGUUGUuGCU- -5'
6672 3' -44.2 NC_001847.1 + 94706 0.67 0.999989
Target:  5'- ----aGUAC-UGGCgCuUCAGCAGCGAg -3'
miRNA:   3'- cuaaaUAUGaACCG-GcAGUUGUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 89783 0.7 0.999404
Target:  5'- ----cGUACgaGGCCGUCAucGCGcugGCGAa -3'
miRNA:   3'- cuaaaUAUGaaCCGGCAGU--UGU---UGCU- -5'
6672 3' -44.2 NC_001847.1 + 87489 0.68 0.999958
Target:  5'- ------aACUUGGCCGugcUCGGCGGCu- -3'
miRNA:   3'- cuaaauaUGAACCGGC---AGUUGUUGcu -5'
6672 3' -44.2 NC_001847.1 + 85740 0.75 0.982159
Target:  5'- ------aGCUUGGCCGUCAGCcccGCGc -3'
miRNA:   3'- cuaaauaUGAACCGGCAGUUGu--UGCu -5'
6672 3' -44.2 NC_001847.1 + 85563 0.67 0.999989
Target:  5'- ---aUGUcCUcGGCCGUCGucuCAACGGc -3'
miRNA:   3'- cuaaAUAuGAaCCGGCAGUu--GUUGCU- -5'
6672 3' -44.2 NC_001847.1 + 84022 0.67 0.999978
Target:  5'- ------cGCcugUGGUgGUCGACGGCGAg -3'
miRNA:   3'- cuaaauaUGa--ACCGgCAGUUGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.