miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 33575 0.67 0.693443
Target:  5'- gGGCgUCUgGCGC-GGCCcGGGCUcgGc -3'
miRNA:   3'- gCCGgAGA-UGCGaCCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 82767 0.66 0.771292
Target:  5'- aCGGCCgUCUGCGCcagcGcGCCGuuGCUGc- -3'
miRNA:   3'- -GCCGG-AGAUGCGa---C-CGGCucCGAUac -5'
6673 3' -58.8 NC_001847.1 + 32207 0.66 0.771292
Target:  5'- aGGCC-CgcggGCGg-GGCCGGGGCg--- -3'
miRNA:   3'- gCCGGaGa---UGCgaCCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 30590 0.66 0.733061
Target:  5'- uGGaguaCCUCUGCGCgcggcUGGCCGcGGCg--- -3'
miRNA:   3'- gCC----GGAGAUGCG-----ACCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 11296 0.66 0.733061
Target:  5'- gGGUCUCgGgGCcucagGGCCGGGGCa--- -3'
miRNA:   3'- gCCGGAGaUgCGa----CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 21779 0.66 0.771292
Target:  5'- gGGCC-CgGCGCcGGCCGGGcGCg--- -3'
miRNA:   3'- gCCGGaGaUGCGaCCGGCUC-CGauac -5'
6673 3' -58.8 NC_001847.1 + 26509 0.66 0.742771
Target:  5'- gGGCCUgCcggGCGCggGGCCgGGGGCg--- -3'
miRNA:   3'- gCCGGA-Ga--UGCGa-CCGG-CUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 118460 0.66 0.733061
Target:  5'- gCGGCCUCgugccugcgGCGCaaGGCCcGGGCg--- -3'
miRNA:   3'- -GCCGGAGa--------UGCGa-CCGGcUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 64060 0.67 0.703446
Target:  5'- -cGCCUCUggccGCGCcGGCCGAGcGCc--- -3'
miRNA:   3'- gcCGGAGA----UGCGaCCGGCUC-CGauac -5'
6673 3' -58.8 NC_001847.1 + 121559 0.67 0.68339
Target:  5'- gGGCCUCUugGaaggUGGCCGAGu----- -3'
miRNA:   3'- gCCGGAGAugCg---ACCGGCUCcgauac -5'
6673 3' -58.8 NC_001847.1 + 14145 0.75 0.262675
Target:  5'- cCGGCCggCUGCGCagcggcGGCCGGGGCg--- -3'
miRNA:   3'- -GCCGGa-GAUGCGa-----CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 58273 0.66 0.752386
Target:  5'- aGGCCUCcaUGUGCUcGGCCGcGGCg--- -3'
miRNA:   3'- gCCGGAG--AUGCGA-CCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 111088 0.66 0.752386
Target:  5'- gGGCCcggCUGCGCgagaaGGUCGcgcggcacGGGCUGUa -3'
miRNA:   3'- gCCGGa--GAUGCGa----CCGGC--------UCCGAUAc -5'
6673 3' -58.8 NC_001847.1 + 33242 0.67 0.713389
Target:  5'- gCGGCUUCgacgACgacggGCUGGCCGAcGCgAUGg -3'
miRNA:   3'- -GCCGGAGa---UG-----CGACCGGCUcCGaUAC- -5'
6673 3' -58.8 NC_001847.1 + 88174 0.67 0.703446
Target:  5'- -uGCCUgCUGCGCuUGGCCcGGGCg--- -3'
miRNA:   3'- gcCGGA-GAUGCG-ACCGGcUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 8473 0.66 0.752386
Target:  5'- gGGCCgggggCgGCGCUcGGCCgGGGGCg--- -3'
miRNA:   3'- gCCGGa----GaUGCGA-CCGG-CUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 87743 0.67 0.68339
Target:  5'- aCGGCCgUCUACGaCgugcGGCuCGAcGGCUAc- -3'
miRNA:   3'- -GCCGG-AGAUGC-Ga---CCG-GCU-CCGAUac -5'
6673 3' -58.8 NC_001847.1 + 82083 0.67 0.682382
Target:  5'- uCGGCgUCUgggccaaGCGCggGGCC-AGGCUcgGa -3'
miRNA:   3'- -GCCGgAGA-------UGCGa-CCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 2221 0.66 0.742771
Target:  5'- aGGCCgccagCgccgcgGCGCUGGgCGcGGGCgUGUGg -3'
miRNA:   3'- gCCGGa----Ga-----UGCGACCgGC-UCCG-AUAC- -5'
6673 3' -58.8 NC_001847.1 + 53581 0.67 0.723263
Target:  5'- cCGGCCccgcgcagCUGCGCggGGCCGGcGaGCUcgGc -3'
miRNA:   3'- -GCCGGa-------GAUGCGa-CCGGCU-C-CGAuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.