Results 21 - 40 of 127 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 82767 | 0.66 | 0.771292 |
Target: 5'- aCGGCCgUCUGCGCcagcGcGCCGuuGCUGc- -3' miRNA: 3'- -GCCGG-AGAUGCGa---C-CGGCucCGAUac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 27667 | 0.68 | 0.612317 |
Target: 5'- cCGGCC-CUgcucgacgcgGCGCgucgGGCUGAGGCg--- -3' miRNA: 3'- -GCCGGaGA----------UGCGa---CCGGCUCCGauac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 30196 | 0.68 | 0.623506 |
Target: 5'- cCGGCgCUCgccuucgaccccgagGCGCUGGCCGAGaucGCg--- -3' miRNA: 3'- -GCCG-GAGa--------------UGCGACCGGCUC---CGauac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 87566 | 0.67 | 0.673295 |
Target: 5'- cCGGCCUUccucggcgcgUGCGC-GGCCGccGGGCUc-- -3' miRNA: 3'- -GCCGGAG----------AUGCGaCCGGC--UCCGAuac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 33242 | 0.67 | 0.713389 |
Target: 5'- gCGGCUUCgacgACgacggGCUGGCCGAcGCgAUGg -3' miRNA: 3'- -GCCGGAGa---UG-----CGACCGGCUcCGaUAC- -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 94745 | 0.69 | 0.561824 |
Target: 5'- gGGCUUUggGCGCgucuUGGCCGGGGCc--- -3' miRNA: 3'- gCCGGAGa-UGCG----ACCGGCUCCGauac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 46911 | 0.68 | 0.612317 |
Target: 5'- aGGCUUCgggggGCGCgucgGGCCcGGGCUccGg -3' miRNA: 3'- gCCGGAGa----UGCGa---CCGGcUCCGAuaC- -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 118460 | 0.66 | 0.733061 |
Target: 5'- gCGGCCUCgugccugcgGCGCaaGGCCcGGGCg--- -3' miRNA: 3'- -GCCGGAGa--------UGCGa-CCGGcUCCGauac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 97006 | 0.68 | 0.663167 |
Target: 5'- gGGUCggcgGCGCUGGCCGcgggGGGCa--- -3' miRNA: 3'- gCCGGaga-UGCGACCGGC----UCCGauac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 33010 | 0.67 | 0.673295 |
Target: 5'- gCGGCCgggggGCGCgcgGGgCGAGGCg--- -3' miRNA: 3'- -GCCGGaga--UGCGa--CCgGCUCCGauac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 26509 | 0.66 | 0.742771 |
Target: 5'- gGGCCUgCcggGCGCggGGCCgGGGGCg--- -3' miRNA: 3'- gCCGGA-Ga--UGCGa-CCGG-CUCCGauac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 8473 | 0.66 | 0.752386 |
Target: 5'- gGGCCgggggCgGCGCUcGGCCgGGGGCg--- -3' miRNA: 3'- gCCGGa----GaUGCGA-CCGG-CUCCGauac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 50103 | 0.7 | 0.532055 |
Target: 5'- uCGGCCagCUGCuggggGCcgGGCUGGGGCUGUc -3' miRNA: 3'- -GCCGGa-GAUG-----CGa-CCGGCUCCGAUAc -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 127077 | 0.69 | 0.551845 |
Target: 5'- gCGGugccccCCUCUGCGCgcgGGCCGcgcGGCUuUGg -3' miRNA: 3'- -GCC------GGAGAUGCGa--CCGGCu--CCGAuAC- -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 31165 | 0.68 | 0.642844 |
Target: 5'- uGGCCuUCUGCGC-GGCCGc-GCUGc- -3' miRNA: 3'- gCCGG-AGAUGCGaCCGGCucCGAUac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 33575 | 0.67 | 0.693443 |
Target: 5'- gGGCgUCUgGCGC-GGCCcGGGCUcgGc -3' miRNA: 3'- gCCGgAGA-UGCGaCCGGcUCCGAuaC- -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 88174 | 0.67 | 0.703446 |
Target: 5'- -uGCCUgCUGCGCuUGGCCcGGGCg--- -3' miRNA: 3'- gcCGGA-GAUGCG-ACCGGcUCCGauac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 58273 | 0.66 | 0.752386 |
Target: 5'- aGGCCUCcaUGUGCUcGGCCGcGGCg--- -3' miRNA: 3'- gCCGGAG--AUGCGA-CCGGCuCCGauac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 75647 | 0.67 | 0.673295 |
Target: 5'- gCGGCCUCgGCGCacccccugccGGCUGGGGaCUAc- -3' miRNA: 3'- -GCCGGAGaUGCGa---------CCGGCUCC-GAUac -5' |
|||||||
6673 | 3' | -58.8 | NC_001847.1 | + | 132036 | 0.68 | 0.653014 |
Target: 5'- aGGCgCUCUAC-CUGGCCGcuaucgugggGGGCg--- -3' miRNA: 3'- gCCG-GAGAUGcGACCGGC----------UCCGauac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home