miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6673 3' -58.8 NC_001847.1 + 82767 0.66 0.771292
Target:  5'- aCGGCCgUCUGCGCcagcGcGCCGuuGCUGc- -3'
miRNA:   3'- -GCCGG-AGAUGCGa---C-CGGCucCGAUac -5'
6673 3' -58.8 NC_001847.1 + 27667 0.68 0.612317
Target:  5'- cCGGCC-CUgcucgacgcgGCGCgucgGGCUGAGGCg--- -3'
miRNA:   3'- -GCCGGaGA----------UGCGa---CCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 30196 0.68 0.623506
Target:  5'- cCGGCgCUCgccuucgaccccgagGCGCUGGCCGAGaucGCg--- -3'
miRNA:   3'- -GCCG-GAGa--------------UGCGACCGGCUC---CGauac -5'
6673 3' -58.8 NC_001847.1 + 87566 0.67 0.673295
Target:  5'- cCGGCCUUccucggcgcgUGCGC-GGCCGccGGGCUc-- -3'
miRNA:   3'- -GCCGGAG----------AUGCGaCCGGC--UCCGAuac -5'
6673 3' -58.8 NC_001847.1 + 33242 0.67 0.713389
Target:  5'- gCGGCUUCgacgACgacggGCUGGCCGAcGCgAUGg -3'
miRNA:   3'- -GCCGGAGa---UG-----CGACCGGCUcCGaUAC- -5'
6673 3' -58.8 NC_001847.1 + 94745 0.69 0.561824
Target:  5'- gGGCUUUggGCGCgucuUGGCCGGGGCc--- -3'
miRNA:   3'- gCCGGAGa-UGCG----ACCGGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 46911 0.68 0.612317
Target:  5'- aGGCUUCgggggGCGCgucgGGCCcGGGCUccGg -3'
miRNA:   3'- gCCGGAGa----UGCGa---CCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 118460 0.66 0.733061
Target:  5'- gCGGCCUCgugccugcgGCGCaaGGCCcGGGCg--- -3'
miRNA:   3'- -GCCGGAGa--------UGCGa-CCGGcUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 97006 0.68 0.663167
Target:  5'- gGGUCggcgGCGCUGGCCGcgggGGGCa--- -3'
miRNA:   3'- gCCGGaga-UGCGACCGGC----UCCGauac -5'
6673 3' -58.8 NC_001847.1 + 33010 0.67 0.673295
Target:  5'- gCGGCCgggggGCGCgcgGGgCGAGGCg--- -3'
miRNA:   3'- -GCCGGaga--UGCGa--CCgGCUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 26509 0.66 0.742771
Target:  5'- gGGCCUgCcggGCGCggGGCCgGGGGCg--- -3'
miRNA:   3'- gCCGGA-Ga--UGCGa-CCGG-CUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 8473 0.66 0.752386
Target:  5'- gGGCCgggggCgGCGCUcGGCCgGGGGCg--- -3'
miRNA:   3'- gCCGGa----GaUGCGA-CCGG-CUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 50103 0.7 0.532055
Target:  5'- uCGGCCagCUGCuggggGCcgGGCUGGGGCUGUc -3'
miRNA:   3'- -GCCGGa-GAUG-----CGa-CCGGCUCCGAUAc -5'
6673 3' -58.8 NC_001847.1 + 127077 0.69 0.551845
Target:  5'- gCGGugccccCCUCUGCGCgcgGGCCGcgcGGCUuUGg -3'
miRNA:   3'- -GCC------GGAGAUGCGa--CCGGCu--CCGAuAC- -5'
6673 3' -58.8 NC_001847.1 + 31165 0.68 0.642844
Target:  5'- uGGCCuUCUGCGC-GGCCGc-GCUGc- -3'
miRNA:   3'- gCCGG-AGAUGCGaCCGGCucCGAUac -5'
6673 3' -58.8 NC_001847.1 + 33575 0.67 0.693443
Target:  5'- gGGCgUCUgGCGC-GGCCcGGGCUcgGc -3'
miRNA:   3'- gCCGgAGA-UGCGaCCGGcUCCGAuaC- -5'
6673 3' -58.8 NC_001847.1 + 88174 0.67 0.703446
Target:  5'- -uGCCUgCUGCGCuUGGCCcGGGCg--- -3'
miRNA:   3'- gcCGGA-GAUGCG-ACCGGcUCCGauac -5'
6673 3' -58.8 NC_001847.1 + 58273 0.66 0.752386
Target:  5'- aGGCCUCcaUGUGCUcGGCCGcGGCg--- -3'
miRNA:   3'- gCCGGAG--AUGCGA-CCGGCuCCGauac -5'
6673 3' -58.8 NC_001847.1 + 75647 0.67 0.673295
Target:  5'- gCGGCCUCgGCGCacccccugccGGCUGGGGaCUAc- -3'
miRNA:   3'- -GCCGGAGaUGCGa---------CCGGCUCC-GAUac -5'
6673 3' -58.8 NC_001847.1 + 132036 0.68 0.653014
Target:  5'- aGGCgCUCUAC-CUGGCCGcuaucgugggGGGCg--- -3'
miRNA:   3'- gCCG-GAGAUGcGACCGGC----------UCCGauac -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.