miRNA display CGI


Results 21 - 40 of 554 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6675 5' -62.6 NC_001847.1 + 3123 0.66 0.567203
Target:  5'- cCGCgGCCGAGAGCaccgggaGCccgGCGGCgCCGg- -3'
miRNA:   3'- uGCG-CGGCUCUCGg------CG---UGUCG-GGCau -5'
6675 5' -62.6 NC_001847.1 + 29330 0.66 0.567203
Target:  5'- gACGCGgUG-GAGCgCGCGCGGCuCCa-- -3'
miRNA:   3'- -UGCGCgGCuCUCG-GCGUGUCG-GGcau -5'
6675 5' -62.6 NC_001847.1 + 929 0.66 0.577054
Target:  5'- -gGCGCCGGGaAGCC-CG-AGCCCGc- -3'
miRNA:   3'- ugCGCGGCUC-UCGGcGUgUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 63193 0.66 0.577054
Target:  5'- cCGCGCCacGAcGuGCgGCGCGGCgCCGUu -3'
miRNA:   3'- uGCGCGG--CU-CuCGgCGUGUCG-GGCAu -5'
6675 5' -62.6 NC_001847.1 + 52556 0.66 0.547638
Target:  5'- gGCGcCGCCGcGAGCgcuucgCGCACGcGCuCCGUGu -3'
miRNA:   3'- -UGC-GCGGCuCUCG------GCGUGU-CG-GGCAU- -5'
6675 5' -62.6 NC_001847.1 + 93310 0.66 0.557396
Target:  5'- gACGUGCCccagcccuGGGAcCCGCGCcGCCCGc- -3'
miRNA:   3'- -UGCGCGG--------CUCUcGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 41835 0.66 0.567203
Target:  5'- gGCGCGCCuacacacGCgCGCGCGGCCUGc- -3'
miRNA:   3'- -UGCGCGGcucu---CG-GCGUGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 73251 0.66 0.577054
Target:  5'- gGCGCGCuCGAG-GCCGUGCGcGCacgCCGa- -3'
miRNA:   3'- -UGCGCG-GCUCuCGGCGUGU-CG---GGCau -5'
6675 5' -62.6 NC_001847.1 + 42891 0.66 0.557396
Target:  5'- cCGCGCCaaGAgcgcGAGCUGCAgCGGCUCGa- -3'
miRNA:   3'- uGCGCGG--CU----CUCGGCGU-GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 121650 0.66 0.577054
Target:  5'- gGCGCGCacuucgcgGAaGGCCGCcgcugugggguGCGGCCCGa- -3'
miRNA:   3'- -UGCGCGg-------CUcUCGGCG-----------UGUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 34302 0.66 0.567203
Target:  5'- gGCGCuccggcccugGCCG-GAGCCGCcCGGgCCGa- -3'
miRNA:   3'- -UGCG----------CGGCuCUCGGCGuGUCgGGCau -5'
6675 5' -62.6 NC_001847.1 + 62537 0.66 0.56622
Target:  5'- cACGUGCCGuGcGGCCaGCAgcgcguuuuggccCAGCCCGc- -3'
miRNA:   3'- -UGCGCGGCuC-UCGG-CGU-------------GUCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 13395 0.66 0.570154
Target:  5'- gGCGCGCCGcGGGCCcugggagaaagacggGCGCGccagcgcGCgCCGUGa -3'
miRNA:   3'- -UGCGCGGCuCUCGG---------------CGUGU-------CG-GGCAU- -5'
6675 5' -62.6 NC_001847.1 + 101034 0.66 0.576067
Target:  5'- -gGCGCCGcAGGcuccgccGCCGCGCgAGCCaCGg- -3'
miRNA:   3'- ugCGCGGC-UCU-------CGGCGUG-UCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 91890 0.66 0.577054
Target:  5'- gUGCcccCCGGGcGCCGCGCcGCCCGc- -3'
miRNA:   3'- uGCGc--GGCUCuCGGCGUGuCGGGCau -5'
6675 5' -62.6 NC_001847.1 + 58082 0.66 0.577054
Target:  5'- cGCGCGCCGcagcgGGuGCCGCGCcGCUa--- -3'
miRNA:   3'- -UGCGCGGC-----UCuCGGCGUGuCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 102293 0.66 0.546665
Target:  5'- uCGCGCgCGAGcGCCGCggucucgGCGGCCaCGc- -3'
miRNA:   3'- uGCGCG-GCUCuCGGCG-------UGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 32810 0.66 0.547638
Target:  5'- gGCGCGuuG-GAGCCGgaCGCGGCCg--- -3'
miRNA:   3'- -UGCGCggCuCUCGGC--GUGUCGGgcau -5'
6675 5' -62.6 NC_001847.1 + 38945 0.66 0.556418
Target:  5'- cCGgGcCCGGGGGCCGCgagcgccauggcgGCGGCCgCGg- -3'
miRNA:   3'- uGCgC-GGCUCUCGGCG-------------UGUCGG-GCau -5'
6675 5' -62.6 NC_001847.1 + 70562 0.66 0.557396
Target:  5'- cACGCGCUcaauGCCcCGCGGCCCGa- -3'
miRNA:   3'- -UGCGCGGcucuCGGcGUGUCGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.