miRNA display CGI


Results 1 - 20 of 317 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6676 3' -58.6 NC_001847.1 + 116304 0.66 0.818091
Target:  5'- gCUGACccgugcggcgcgcgcGAGGACGccgugcccauGCGCgCGCUGGCGc -3'
miRNA:   3'- aGACUGu--------------CUCCUGC----------UGCG-GUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 73539 0.66 0.817243
Target:  5'- gCUGauuGCGGAGGugGGCGCgGgCGugucGCGg -3'
miRNA:   3'- aGAC---UGUCUCCugCUGCGgUgGC----CGC- -5'
6676 3' -58.6 NC_001847.1 + 105574 0.66 0.817243
Target:  5'- --cGGCGGcgccGGcgcCGGCGCCcccGCCGGCGg -3'
miRNA:   3'- agaCUGUCu---CCu--GCUGCGG---UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 69212 0.66 0.817243
Target:  5'- cCUgGGCGuccgcGGGGAacgcCGACGCCGCgaCGGCGa -3'
miRNA:   3'- aGA-CUGU-----CUCCU----GCUGCGGUG--GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 84581 0.66 0.817243
Target:  5'- gUCgu-CAGAGG-CGACGCCG-CGGUc -3'
miRNA:   3'- -AGacuGUCUCCuGCUGCGGUgGCCGc -5'
6676 3' -58.6 NC_001847.1 + 78250 0.66 0.817243
Target:  5'- -----uGGAGGcCGACGUCGCCGcGCa -3'
miRNA:   3'- agacugUCUCCuGCUGCGGUGGC-CGc -5'
6676 3' -58.6 NC_001847.1 + 84226 0.66 0.817243
Target:  5'- cCUGACGGccGGGGC--CGCCGCgGGgGa -3'
miRNA:   3'- aGACUGUC--UCCUGcuGCGGUGgCCgC- -5'
6676 3' -58.6 NC_001847.1 + 74684 0.66 0.817243
Target:  5'- ---cGCGGcAGGACGGCG--GCCGGCGc -3'
miRNA:   3'- agacUGUC-UCCUGCUGCggUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 37094 0.66 0.817243
Target:  5'- cCUGagcGCGGAGaGCGGC-CCGCUGGUGu -3'
miRNA:   3'- aGAC---UGUCUCcUGCUGcGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 2761 0.66 0.817243
Target:  5'- --cGGCGGcgccGGcgcCGGCGCCcccGCCGGCGg -3'
miRNA:   3'- agaCUGUCu---CCu--GCUGCGG---UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 52801 0.66 0.814689
Target:  5'- --cGACAu-GGGCGGggcuauaggucgcuCGUCGCCGGCGa -3'
miRNA:   3'- agaCUGUcuCCUGCU--------------GCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 32837 0.66 0.809539
Target:  5'- aUCUGGgGcGAGGAcuaCGACGCCGggcccaucgaccucaCGGCGg -3'
miRNA:   3'- -AGACUgU-CUCCU---GCUGCGGUg--------------GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 17810 0.66 0.808675
Target:  5'- ---cGCGGGGGGCGAgGCCGCCccccGCc -3'
miRNA:   3'- agacUGUCUCCUGCUgCGGUGGc---CGc -5'
6676 3' -58.6 NC_001847.1 + 62474 0.66 0.808675
Target:  5'- ---aGCAG-GGcCGGgGUCGCCGGCGg -3'
miRNA:   3'- agacUGUCuCCuGCUgCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 10845 0.66 0.808675
Target:  5'- --cGACGGcGGcGCGugGCCgagGCgCGGCGg -3'
miRNA:   3'- agaCUGUCuCC-UGCugCGG---UG-GCCGC- -5'
6676 3' -58.6 NC_001847.1 + 59544 0.66 0.808675
Target:  5'- -aUGGCAGgcggugGGGGCGGCGggggcgguGCCGGCGg -3'
miRNA:   3'- agACUGUC------UCCUGCUGCgg------UGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 132694 0.66 0.808675
Target:  5'- --gGACGG-GGACGGCGaggcggcggccCUGCCGGCc -3'
miRNA:   3'- agaCUGUCuCCUGCUGC-----------GGUGGCCGc -5'
6676 3' -58.6 NC_001847.1 + 21199 0.66 0.808675
Target:  5'- --cGGCGGcguAGGA-GACGCCGCC-GCGa -3'
miRNA:   3'- agaCUGUC---UCCUgCUGCGGUGGcCGC- -5'
6676 3' -58.6 NC_001847.1 + 78644 0.66 0.808675
Target:  5'- uUUUGGCGGcgcGGuCGcgcgcgccuGCGUCGCCGGCGu -3'
miRNA:   3'- -AGACUGUCu--CCuGC---------UGCGGUGGCCGC- -5'
6676 3' -58.6 NC_001847.1 + 124748 0.66 0.808675
Target:  5'- --gGAgAGAGGACcgcggcucgcgGGCGgCACCGGgGg -3'
miRNA:   3'- agaCUgUCUCCUG-----------CUGCgGUGGCCgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.