miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6677 3' -53.9 NC_001847.1 + 78843 0.66 0.958628
Target:  5'- gCGCUCcgGCGAGuagcugguguGCUC-GCGguGCGCg -3'
miRNA:   3'- -GCGAGaaUGCUC----------CGGGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 73287 0.66 0.958628
Target:  5'- gCGCUCggcagGCGcGGCCUacgccgGCGAcggcgagucgGACGCc -3'
miRNA:   3'- -GCGAGaa---UGCuCCGGGa-----CGCU----------UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 52413 0.66 0.958628
Target:  5'- uGCUCcagGCGcuGGGCCCgcgcGUGGAGCa- -3'
miRNA:   3'- gCGAGaa-UGC--UCCGGGa---CGCUUUGcg -5'
6677 3' -53.9 NC_001847.1 + 51990 0.66 0.958628
Target:  5'- gGCg-UUGgGAGGUcgCCggGCGGGACGCa -3'
miRNA:   3'- gCGagAAUgCUCCG--GGa-CGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 48892 0.66 0.958628
Target:  5'- gCGCggggGCGAGuGCCCUGUu---CGCa -3'
miRNA:   3'- -GCGagaaUGCUC-CGGGACGcuuuGCG- -5'
6677 3' -53.9 NC_001847.1 + 9889 0.66 0.958628
Target:  5'- -uCUUUUGCGAGGCCgUcGCGcucGugGCc -3'
miRNA:   3'- gcGAGAAUGCUCCGGgA-CGCu--UugCG- -5'
6677 3' -53.9 NC_001847.1 + 35204 0.66 0.958628
Target:  5'- gCGCgCgcgGCuGGGcGCCCUGCGcgcGGACGUg -3'
miRNA:   3'- -GCGaGaa-UG-CUC-CGGGACGC---UUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 33871 0.66 0.958628
Target:  5'- gCGCuUCUUGCagGAGGCgCCgccGCGcGugGCc -3'
miRNA:   3'- -GCG-AGAAUG--CUCCG-GGa--CGCuUugCG- -5'
6677 3' -53.9 NC_001847.1 + 61737 0.66 0.958628
Target:  5'- cCGgUCgccgUACGAGuGUCgCUGCGAGGCcCa -3'
miRNA:   3'- -GCgAGa---AUGCUC-CGG-GACGCUUUGcG- -5'
6677 3' -53.9 NC_001847.1 + 36078 0.66 0.958628
Target:  5'- gCGCgCUggacGCGcGGCUg-GCGGAGCGCg -3'
miRNA:   3'- -GCGaGAa---UGCuCCGGgaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 6749 0.66 0.958628
Target:  5'- gGCgUCgucUGCGGugcGGCCggUGCGAGGCGCc -3'
miRNA:   3'- gCG-AGa--AUGCU---CCGGg-ACGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 73784 0.66 0.958254
Target:  5'- aCGcCUCgccggUGCGGGGCugCCUGcCGGugggcuaGGCGCg -3'
miRNA:   3'- -GC-GAGa----AUGCUCCG--GGAC-GCU-------UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 19374 0.66 0.956347
Target:  5'- aCGCUCUggcCGAgccggcuccccgcucGGCUCcGCGGcGACGCa -3'
miRNA:   3'- -GCGAGAau-GCU---------------CCGGGaCGCU-UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 7264 0.66 0.954779
Target:  5'- gCGCg---GCGGGGgCaC-GCGAGACGCu -3'
miRNA:   3'- -GCGagaaUGCUCCgG-GaCGCUUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 106062 0.66 0.954779
Target:  5'- uGCUCgccgGCGgcagGGGCgCCgGCGccGCGCg -3'
miRNA:   3'- gCGAGaa--UGC----UCCG-GGaCGCuuUGCG- -5'
6677 3' -53.9 NC_001847.1 + 119611 0.66 0.954779
Target:  5'- gGCgacgACGAGGCCC-GCGAGgAUGa -3'
miRNA:   3'- gCGagaaUGCUCCGGGaCGCUU-UGCg -5'
6677 3' -53.9 NC_001847.1 + 82158 0.66 0.954779
Target:  5'- -aUUgUUAUG-GGCCaCUGCGcGACGCg -3'
miRNA:   3'- gcGAgAAUGCuCCGG-GACGCuUUGCG- -5'
6677 3' -53.9 NC_001847.1 + 34164 0.66 0.954779
Target:  5'- gCGCgaggcgGCuGAGGCgCUGCGGgccgggGGCGCg -3'
miRNA:   3'- -GCGagaa--UG-CUCCGgGACGCU------UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 96200 0.66 0.954779
Target:  5'- gCGCUCgcgGCccccGGGCCCggGaCGAcGACGCu -3'
miRNA:   3'- -GCGAGaa-UGc---UCCGGGa-C-GCU-UUGCG- -5'
6677 3' -53.9 NC_001847.1 + 121862 0.66 0.954779
Target:  5'- uGCUUcaccgACGuGGCCCUG---GACGCg -3'
miRNA:   3'- gCGAGaa---UGCuCCGGGACgcuUUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.