Results 1 - 20 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6677 | 3' | -53.9 | NC_001847.1 | + | 33871 | 0.66 | 0.958628 |
Target: 5'- gCGCuUCUUGCagGAGGCgCCgccGCGcGugGCc -3' miRNA: 3'- -GCG-AGAAUG--CUCCG-GGa--CGCuUugCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 61737 | 0.66 | 0.958628 |
Target: 5'- cCGgUCgccgUACGAGuGUCgCUGCGAGGCcCa -3' miRNA: 3'- -GCgAGa---AUGCUC-CGG-GACGCUUUGcG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 73287 | 0.66 | 0.958628 |
Target: 5'- gCGCUCggcagGCGcGGCCUacgccgGCGAcggcgagucgGACGCc -3' miRNA: 3'- -GCGAGaa---UGCuCCGGGa-----CGCU----------UUGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 52413 | 0.66 | 0.958628 |
Target: 5'- uGCUCcagGCGcuGGGCCCgcgcGUGGAGCa- -3' miRNA: 3'- gCGAGaa-UGC--UCCGGGa---CGCUUUGcg -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 51990 | 0.66 | 0.958628 |
Target: 5'- gGCg-UUGgGAGGUcgCCggGCGGGACGCa -3' miRNA: 3'- gCGagAAUgCUCCG--GGa-CGCUUUGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 48892 | 0.66 | 0.958628 |
Target: 5'- gCGCggggGCGAGuGCCCUGUu---CGCa -3' miRNA: 3'- -GCGagaaUGCUC-CGGGACGcuuuGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 9889 | 0.66 | 0.958628 |
Target: 5'- -uCUUUUGCGAGGCCgUcGCGcucGugGCc -3' miRNA: 3'- gcGAGAAUGCUCCGGgA-CGCu--UugCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 35204 | 0.66 | 0.958628 |
Target: 5'- gCGCgCgcgGCuGGGcGCCCUGCGcgcGGACGUg -3' miRNA: 3'- -GCGaGaa-UG-CUC-CGGGACGC---UUUGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 78843 | 0.66 | 0.958628 |
Target: 5'- gCGCUCcgGCGAGuagcugguguGCUC-GCGguGCGCg -3' miRNA: 3'- -GCGAGaaUGCUC----------CGGGaCGCuuUGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 6749 | 0.66 | 0.958628 |
Target: 5'- gGCgUCgucUGCGGugcGGCCggUGCGAGGCGCc -3' miRNA: 3'- gCG-AGa--AUGCU---CCGGg-ACGCUUUGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 36078 | 0.66 | 0.958628 |
Target: 5'- gCGCgCUggacGCGcGGCUg-GCGGAGCGCg -3' miRNA: 3'- -GCGaGAa---UGCuCCGGgaCGCUUUGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 73784 | 0.66 | 0.958254 |
Target: 5'- aCGcCUCgccggUGCGGGGCugCCUGcCGGugggcuaGGCGCg -3' miRNA: 3'- -GC-GAGa----AUGCUCCG--GGAC-GCU-------UUGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 19374 | 0.66 | 0.956347 |
Target: 5'- aCGCUCUggcCGAgccggcuccccgcucGGCUCcGCGGcGACGCa -3' miRNA: 3'- -GCGAGAau-GCU---------------CCGGGaCGCU-UUGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 96200 | 0.66 | 0.954779 |
Target: 5'- gCGCUCgcgGCccccGGGCCCggGaCGAcGACGCu -3' miRNA: 3'- -GCGAGaa-UGc---UCCGGGa-C-GCU-UUGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 121862 | 0.66 | 0.954779 |
Target: 5'- uGCUUcaccgACGuGGCCCUG---GACGCg -3' miRNA: 3'- gCGAGaa---UGCuCCGGGACgcuUUGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 82158 | 0.66 | 0.954779 |
Target: 5'- -aUUgUUAUG-GGCCaCUGCGcGACGCg -3' miRNA: 3'- gcGAgAAUGCuCCGG-GACGCuUUGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 119611 | 0.66 | 0.954779 |
Target: 5'- gGCgacgACGAGGCCC-GCGAGgAUGa -3' miRNA: 3'- gCGagaaUGCUCCGGGaCGCUU-UGCg -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 34164 | 0.66 | 0.954779 |
Target: 5'- gCGCgaggcgGCuGAGGCgCUGCGGgccgggGGCGCg -3' miRNA: 3'- -GCGagaa--UG-CUCCGgGACGCU------UUGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 106062 | 0.66 | 0.954779 |
Target: 5'- uGCUCgccgGCGgcagGGGCgCCgGCGccGCGCg -3' miRNA: 3'- gCGAGaa--UGC----UCCG-GGaCGCuuUGCG- -5' |
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6677 | 3' | -53.9 | NC_001847.1 | + | 7264 | 0.66 | 0.954779 |
Target: 5'- gCGCg---GCGGGGgCaC-GCGAGACGCu -3' miRNA: 3'- -GCGagaaUGCUCCgG-GaCGCUUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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