miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 5' -57 NC_001847.1 + 16626 0.66 0.871311
Target:  5'- uUGGGGGgggGCGCggCggcuuugccgucgggGCCCCGCGCcuacaGGCg -3'
miRNA:   3'- gAUCUCUa--UGUGa-G---------------CGGGGCGCG-----CCG- -5'
6678 5' -57 NC_001847.1 + 20806 0.66 0.871311
Target:  5'- -cGGcGGGUGCuucggcggcgcuuucGCUCGCCUcuuacgCGCGCGGUc -3'
miRNA:   3'- gaUC-UCUAUG---------------UGAGCGGG------GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 15987 0.66 0.868367
Target:  5'- --------cCGC-CGCCCCGCgGCGGCc -3'
miRNA:   3'- gaucucuauGUGaGCGGGGCG-CGCCG- -5'
6678 5' -57 NC_001847.1 + 56795 0.66 0.868367
Target:  5'- --cGAGggGCugUuCGCCgC-CGCGGCg -3'
miRNA:   3'- gauCUCuaUGugA-GCGGgGcGCGCCG- -5'
6678 5' -57 NC_001847.1 + 101243 0.66 0.868367
Target:  5'- -cAGGcGGUccuGCACgcccgCGgCCaCGCGCGGCg -3'
miRNA:   3'- gaUCU-CUA---UGUGa----GCgGG-GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 111389 0.66 0.868367
Target:  5'- -gGGAGGgcacagGCAaauCagGCCCCGCcagggGCGGCg -3'
miRNA:   3'- gaUCUCUa-----UGU---GagCGGGGCG-----CGCCG- -5'
6678 5' -57 NC_001847.1 + 86927 0.66 0.868367
Target:  5'- aUGGuGGcggcgcUGCGCUCcucgGCCCUggccgccgGCGCGGCa -3'
miRNA:   3'- gAUCuCU------AUGUGAG----CGGGG--------CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 15099 0.66 0.868367
Target:  5'- -cGGGGccGCGCUCaugcugacgGCCCUGacgGCGGCg -3'
miRNA:   3'- gaUCUCuaUGUGAG---------CGGGGCg--CGCCG- -5'
6678 5' -57 NC_001847.1 + 83128 0.66 0.868367
Target:  5'- --cGAGcgcuaGUGCGCgccugcugCGUCCCGCcCGGCg -3'
miRNA:   3'- gauCUC-----UAUGUGa-------GCGGGGCGcGCCG- -5'
6678 5' -57 NC_001847.1 + 102235 0.66 0.868367
Target:  5'- --cGGGAcgGCGuCcaggCGCUCgCGCGCGGCg -3'
miRNA:   3'- gauCUCUa-UGU-Ga---GCGGG-GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 120301 0.66 0.868367
Target:  5'- -------aACGCUCGCgCUGCGgGGCc -3'
miRNA:   3'- gaucucuaUGUGAGCGgGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 31749 0.66 0.868367
Target:  5'- --cGAGcgGCGCguggucagcgUGCaCCCGCGCGcGCc -3'
miRNA:   3'- gauCUCuaUGUGa---------GCG-GGGCGCGC-CG- -5'
6678 5' -57 NC_001847.1 + 16047 0.66 0.868367
Target:  5'- --------cCGC-CGCCCCGCgGCGGCc -3'
miRNA:   3'- gaucucuauGUGaGCGGGGCG-CGCCG- -5'
6678 5' -57 NC_001847.1 + 125541 0.66 0.868367
Target:  5'- ---cAGcUACGgUCGUCCC-CGCGGCu -3'
miRNA:   3'- gaucUCuAUGUgAGCGGGGcGCGCCG- -5'
6678 5' -57 NC_001847.1 + 120155 0.66 0.868367
Target:  5'- --cGAGggGCGCUUGCCaagcuUGCGCaGCa -3'
miRNA:   3'- gauCUCuaUGUGAGCGGg----GCGCGcCG- -5'
6678 5' -57 NC_001847.1 + 53246 0.66 0.868367
Target:  5'- gCUGGcuGcgGCGC-CGCCUCGgCGgGGCg -3'
miRNA:   3'- -GAUCu-CuaUGUGaGCGGGGC-GCgCCG- -5'
6678 5' -57 NC_001847.1 + 101413 0.66 0.868367
Target:  5'- -cGGGGGU---CUCGUcuCCCGCcGCGGCu -3'
miRNA:   3'- gaUCUCUAuguGAGCG--GGGCG-CGCCG- -5'
6678 5' -57 NC_001847.1 + 87689 0.66 0.868367
Target:  5'- gCUGGGGcUGCuGCggCGCCgCG-GCGGCg -3'
miRNA:   3'- -GAUCUCuAUG-UGa-GCGGgGCgCGCCG- -5'
6678 5' -57 NC_001847.1 + 8576 0.66 0.868367
Target:  5'- -gGGAGGgcacagGCAaauCagGCCCCGCcagggGCGGCg -3'
miRNA:   3'- gaUCUCUa-----UGU---GagCGGGGCG-----CGCCG- -5'
6678 5' -57 NC_001847.1 + 36405 0.66 0.867626
Target:  5'- --cGAcGGUGCACUCGCgcgcagacCCUGCgacgcgcgccguaGCGGCg -3'
miRNA:   3'- gauCU-CUAUGUGAGCG--------GGGCG-------------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.