Results 1 - 20 of 358 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6678 | 5' | -57 | NC_001847.1 | + | 20806 | 0.66 | 0.871311 |
Target: 5'- -cGGcGGGUGCuucggcggcgcuuucGCUCGCCUcuuacgCGCGCGGUc -3' miRNA: 3'- gaUC-UCUAUG---------------UGAGCGGG------GCGCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 16626 | 0.66 | 0.871311 |
Target: 5'- uUGGGGGgggGCGCggCggcuuugccgucgggGCCCCGCGCcuacaGGCg -3' miRNA: 3'- gAUCUCUa--UGUGa-G---------------CGGGGCGCG-----CCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 120301 | 0.66 | 0.868367 |
Target: 5'- -------aACGCUCGCgCUGCGgGGCc -3' miRNA: 3'- gaucucuaUGUGAGCGgGGCGCgCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 8576 | 0.66 | 0.868367 |
Target: 5'- -gGGAGGgcacagGCAaauCagGCCCCGCcagggGCGGCg -3' miRNA: 3'- gaUCUCUa-----UGU---GagCGGGGCG-----CGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 101413 | 0.66 | 0.868367 |
Target: 5'- -cGGGGGU---CUCGUcuCCCGCcGCGGCu -3' miRNA: 3'- gaUCUCUAuguGAGCG--GGGCG-CGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 111389 | 0.66 | 0.868367 |
Target: 5'- -gGGAGGgcacagGCAaauCagGCCCCGCcagggGCGGCg -3' miRNA: 3'- gaUCUCUa-----UGU---GagCGGGGCG-----CGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 86927 | 0.66 | 0.868367 |
Target: 5'- aUGGuGGcggcgcUGCGCUCcucgGCCCUggccgccgGCGCGGCa -3' miRNA: 3'- gAUCuCU------AUGUGAG----CGGGG--------CGCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 15099 | 0.66 | 0.868367 |
Target: 5'- -cGGGGccGCGCUCaugcugacgGCCCUGacgGCGGCg -3' miRNA: 3'- gaUCUCuaUGUGAG---------CGGGGCg--CGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 101243 | 0.66 | 0.868367 |
Target: 5'- -cAGGcGGUccuGCACgcccgCGgCCaCGCGCGGCg -3' miRNA: 3'- gaUCU-CUA---UGUGa----GCgGG-GCGCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 56795 | 0.66 | 0.868367 |
Target: 5'- --cGAGggGCugUuCGCCgC-CGCGGCg -3' miRNA: 3'- gauCUCuaUGugA-GCGGgGcGCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 102235 | 0.66 | 0.868367 |
Target: 5'- --cGGGAcgGCGuCcaggCGCUCgCGCGCGGCg -3' miRNA: 3'- gauCUCUa-UGU-Ga---GCGGG-GCGCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 15987 | 0.66 | 0.868367 |
Target: 5'- --------cCGC-CGCCCCGCgGCGGCc -3' miRNA: 3'- gaucucuauGUGaGCGGGGCG-CGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 31749 | 0.66 | 0.868367 |
Target: 5'- --cGAGcgGCGCguggucagcgUGCaCCCGCGCGcGCc -3' miRNA: 3'- gauCUCuaUGUGa---------GCG-GGGCGCGC-CG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 87689 | 0.66 | 0.868367 |
Target: 5'- gCUGGGGcUGCuGCggCGCCgCG-GCGGCg -3' miRNA: 3'- -GAUCUCuAUG-UGa-GCGGgGCgCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 83128 | 0.66 | 0.868367 |
Target: 5'- --cGAGcgcuaGUGCGCgccugcugCGUCCCGCcCGGCg -3' miRNA: 3'- gauCUC-----UAUGUGa-------GCGGGGCGcGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 53246 | 0.66 | 0.868367 |
Target: 5'- gCUGGcuGcgGCGC-CGCCUCGgCGgGGCg -3' miRNA: 3'- -GAUCu-CuaUGUGaGCGGGGC-GCgCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 120155 | 0.66 | 0.868367 |
Target: 5'- --cGAGggGCGCUUGCCaagcuUGCGCaGCa -3' miRNA: 3'- gauCUCuaUGUGAGCGGg----GCGCGcCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 125541 | 0.66 | 0.868367 |
Target: 5'- ---cAGcUACGgUCGUCCC-CGCGGCu -3' miRNA: 3'- gaucUCuAUGUgAGCGGGGcGCGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 16047 | 0.66 | 0.868367 |
Target: 5'- --------cCGC-CGCCCCGCgGCGGCc -3' miRNA: 3'- gaucucuauGUGaGCGGGGCG-CGCCG- -5' |
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6678 | 5' | -57 | NC_001847.1 | + | 36405 | 0.66 | 0.867626 |
Target: 5'- --cGAcGGUGCACUCGCgcgcagacCCUGCgacgcgcgccguaGCGGCg -3' miRNA: 3'- gauCU-CUAUGUGAGCG--------GGGCG-------------CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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