miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6678 5' -57 NC_001847.1 + 129682 0.66 0.860861
Target:  5'- -aGGAGAgagACGCggcCGCCaCCGcCGUcgGGCa -3'
miRNA:   3'- gaUCUCUa--UGUGa--GCGG-GGC-GCG--CCG- -5'
6678 5' -57 NC_001847.1 + 129400 0.67 0.811752
Target:  5'- --uGAGcUugGCggcgaacCGCCCCGCG-GGCa -3'
miRNA:   3'- gauCUCuAugUGa------GCGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 129027 0.7 0.616765
Target:  5'- -cGGcGAgGCGCUCGCgCCGCGCcucgcgGGCg -3'
miRNA:   3'- gaUCuCUaUGUGAGCGgGGCGCG------CCG- -5'
6678 5' -57 NC_001847.1 + 128429 0.76 0.333707
Target:  5'- -gAGGGccagacuacaGUGCGCUCgGCCCUGCGCGcGCg -3'
miRNA:   3'- gaUCUC----------UAUGUGAG-CGGGGCGCGC-CG- -5'
6678 5' -57 NC_001847.1 + 127232 0.76 0.331462
Target:  5'- -gGGGGAagaagcggcggccgcCGCgCGCCCCGCGCGGCu -3'
miRNA:   3'- gaUCUCUau-------------GUGaGCGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 126986 0.67 0.828852
Target:  5'- gCUGGAGGccaGCcaagcaGCCCCGCGaGGCu -3'
miRNA:   3'- -GAUCUCUaugUGag----CGGGGCGCgCCG- -5'
6678 5' -57 NC_001847.1 + 125541 0.66 0.868367
Target:  5'- ---cAGcUACGgUCGUCCC-CGCGGCu -3'
miRNA:   3'- gaucUCuAUGUgAGCGGGGcGCGCCG- -5'
6678 5' -57 NC_001847.1 + 125457 0.74 0.406143
Target:  5'- -cGGGGAggGCggGCUUGCCCCGgGCGGg -3'
miRNA:   3'- gaUCUCUa-UG--UGAGCGGGGCgCGCCg -5'
6678 5' -57 NC_001847.1 + 125076 0.74 0.414781
Target:  5'- -cGGcGggGCGCUgGgCCCGCGCGGCc -3'
miRNA:   3'- gaUCuCuaUGUGAgCgGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 124663 0.68 0.753975
Target:  5'- -cGGGGAagcccagcucggccUGCAUUCGCUCCagcaaCGCGGCc -3'
miRNA:   3'- gaUCUCU--------------AUGUGAGCGGGGc----GCGCCG- -5'
6678 5' -57 NC_001847.1 + 124549 0.67 0.794005
Target:  5'- --cGGGccgGCGC-CGgCCCGCGCGcGCg -3'
miRNA:   3'- gauCUCua-UGUGaGCgGGGCGCGC-CG- -5'
6678 5' -57 NC_001847.1 + 124325 0.77 0.297747
Target:  5'- aUAGAGAgGCAaggcgCGCCUgCGCGCGGCg -3'
miRNA:   3'- gAUCUCUaUGUga---GCGGG-GCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 123932 0.71 0.576167
Target:  5'- -cAGAGGcccCACUUcaaccucgaccaGCCCCGCGCGGa -3'
miRNA:   3'- gaUCUCUau-GUGAG------------CGGGGCGCGCCg -5'
6678 5' -57 NC_001847.1 + 123762 0.71 0.606581
Target:  5'- uCUGGAGucgucccguaGUugA-UCGCgCCGCGCGGCc -3'
miRNA:   3'- -GAUCUC----------UAugUgAGCGgGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 123383 0.71 0.586274
Target:  5'- aUGGAGcgcucACACaaaGCCUCGUGCGGCu -3'
miRNA:   3'- gAUCUCua---UGUGag-CGGGGCGCGCCG- -5'
6678 5' -57 NC_001847.1 + 123276 0.68 0.736591
Target:  5'- gUGGcuuuuAUACGCUCGCgCCGCccgcaggGCGGCg -3'
miRNA:   3'- gAUCuc---UAUGUGAGCGgGGCG-------CGCCG- -5'
6678 5' -57 NC_001847.1 + 122220 0.7 0.616765
Target:  5'- --cGAcGAcACGCgCGCCCC-CGCGGCg -3'
miRNA:   3'- gauCU-CUaUGUGaGCGGGGcGCGCCG- -5'
6678 5' -57 NC_001847.1 + 121604 0.67 0.784909
Target:  5'- -------cGCGC-CGCCCCG-GCGGCg -3'
miRNA:   3'- gaucucuaUGUGaGCGGGGCgCGCCG- -5'
6678 5' -57 NC_001847.1 + 121192 0.73 0.4596
Target:  5'- -gGGAGcgGCACUUgcgcggggcgGCCCCccugccgcgGCGCGGCa -3'
miRNA:   3'- gaUCUCuaUGUGAG----------CGGGG---------CGCGCCG- -5'
6678 5' -57 NC_001847.1 + 120570 0.7 0.667708
Target:  5'- uUAGAGAgcCGCgCGCCCgccagcacccgCGCuGCGGCg -3'
miRNA:   3'- gAUCUCUauGUGaGCGGG-----------GCG-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.