miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 24180 0.66 0.771831
Target:  5'- gUACUCGCacAGcGuGGCGCugGuGGCCAu -3'
miRNA:   3'- gAUGGGCG--UC-CuCCGUGugUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 80849 0.66 0.771831
Target:  5'- -gAUCCGgGcGGcGGCGCGCGucgAGGCCGu -3'
miRNA:   3'- gaUGGGCgU-CCuCCGUGUGU---UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 105245 0.66 0.771831
Target:  5'- --cCCCGC-GGcGGCcgGCAGGGCCGc -3'
miRNA:   3'- gauGGGCGuCCuCCGugUGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 69290 0.66 0.769005
Target:  5'- -cGCCgCGCAGGaAGGCgucguagagguccgACACcacgccguGGGCCAg -3'
miRNA:   3'- gaUGG-GCGUCC-UCCG--------------UGUGu-------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 46896 0.66 0.769005
Target:  5'- -aGCgCCGCuucagcgaggcuucGGGGGGCGCGucGGGCCc -3'
miRNA:   3'- gaUG-GGCG--------------UCCUCCGUGUguUCCGGu -5'
6679 3' -58.4 NC_001847.1 + 22136 0.66 0.769005
Target:  5'- -gGCCCgGCGGcGGcggcGGCGCGCAaaagccggcgcagcGGGCCGg -3'
miRNA:   3'- gaUGGG-CGUC-CU----CCGUGUGU--------------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 124949 0.66 0.769005
Target:  5'- -gGCCCgGCGGcGGcggcGGCGCGCAaaagccggcgcagcGGGCCGg -3'
miRNA:   3'- gaUGGG-CGUC-CU----CCGUGUGU--------------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 129651 0.66 0.766168
Target:  5'- -aGCCCGCGGaacaagaaaGAGGCGCggggaaaggagagagACGcGGCCGc -3'
miRNA:   3'- gaUGGGCGUC---------CUCCGUG---------------UGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 28097 0.66 0.766168
Target:  5'- cCUGCCCG-GGGccGCGCGCGAcaccgccgauuucauGGCCGg -3'
miRNA:   3'- -GAUGGGCgUCCucCGUGUGUU---------------CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 26838 0.66 0.766168
Target:  5'- -aGCCCGCGGaacaagaaaGAGGCGCggggaaaggagagagACGcGGCCGc -3'
miRNA:   3'- gaUGGGCGUC---------CUCCGUG---------------UGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 74424 0.66 0.762368
Target:  5'- -cGCCCGUcguGGAggucguggcGGCGCACGAcGCCGu -3'
miRNA:   3'- gaUGGGCGu--CCU---------CCGUGUGUUcCGGU- -5'
6679 3' -58.4 NC_001847.1 + 135131 0.66 0.762368
Target:  5'- -gGgUCGCAGGGGGCcCGCGcGGCgCGg -3'
miRNA:   3'- gaUgGGCGUCCUCCGuGUGUuCCG-GU- -5'
6679 3' -58.4 NC_001847.1 + 47011 0.66 0.762368
Target:  5'- gCUGCCCGUcaaaaauGGCGCGCGAcaccgugauuccGGCCAg -3'
miRNA:   3'- -GAUGGGCGuccu---CCGUGUGUU------------CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 77853 0.66 0.762368
Target:  5'- -aGCgCGCuGGGGGCGCuCucGGCCc -3'
miRNA:   3'- gaUGgGCGuCCUCCGUGuGuuCCGGu -5'
6679 3' -58.4 NC_001847.1 + 98931 0.66 0.762368
Target:  5'- -aGgCCGcCAGGAgGGCGCGCAGccccucguacgcGGCCu -3'
miRNA:   3'- gaUgGGC-GUCCU-CCGUGUGUU------------CCGGu -5'
6679 3' -58.4 NC_001847.1 + 21319 0.66 0.762368
Target:  5'- -cGCCaCGC-GG-GGUGC-CAAGGCCAu -3'
miRNA:   3'- gaUGG-GCGuCCuCCGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 5252 0.66 0.762368
Target:  5'- --cUCCGCgggggAGGGGGCGCuuGAGGCgAa -3'
miRNA:   3'- gauGGGCG-----UCCUCCGUGugUUCCGgU- -5'
6679 3' -58.4 NC_001847.1 + 100615 0.66 0.762368
Target:  5'- -cGCCCgGCGGGcGGCGCAUcgccGGcGCCGu -3'
miRNA:   3'- gaUGGG-CGUCCuCCGUGUGu---UC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 3786 0.66 0.762368
Target:  5'- -cGCCCGCGccgccGAaGCGCACGcGGCCGg -3'
miRNA:   3'- gaUGGGCGUc----CUcCGUGUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 106599 0.66 0.762368
Target:  5'- -cGCCCGCGccgccGAaGCGCACGcGGCCGg -3'
miRNA:   3'- gaUGGGCGUc----CUcCGUGUGUuCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.