miRNA display CGI


Results 41 - 60 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6679 3' -58.4 NC_001847.1 + 13438 0.66 0.761416
Target:  5'- -gGCCUGCGcuGGcuguaucuagcGGGCGCGCAccugcucGGGCCGc -3'
miRNA:   3'- gaUGGGCGU--CC-----------UCCGUGUGU-------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 54466 0.66 0.759507
Target:  5'- -aGCCCgaggaggaggGCGGGAcggacaacgacggcGGCGC-CGGGGCCGg -3'
miRNA:   3'- gaUGGG----------CGUCCU--------------CCGUGuGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 58225 0.66 0.75279
Target:  5'- uCUGCCCGCcGGGcggcagcggcGGCGCGCGAccGCCc -3'
miRNA:   3'- -GAUGGGCGuCCU----------CCGUGUGUUc-CGGu -5'
6679 3' -58.4 NC_001847.1 + 108475 0.66 0.75279
Target:  5'- -gGCCCGCcc-AGGCGCGaagguGGGCCGg -3'
miRNA:   3'- gaUGGGCGuccUCCGUGUgu---UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 60860 0.66 0.75279
Target:  5'- -cGCCCGCc-GAGGCcaGCGCAgcgcgcgcgcGGGCCc -3'
miRNA:   3'- gaUGGGCGucCUCCG--UGUGU----------UCCGGu -5'
6679 3' -58.4 NC_001847.1 + 134188 0.66 0.75279
Target:  5'- -cGCCCgGCGcagcguGGAgcGGCGCGCGcGGGCCGa -3'
miRNA:   3'- gaUGGG-CGU------CCU--CCGUGUGU-UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 100505 0.66 0.75279
Target:  5'- -cGCgCCGCucGGccucGGCGCGCAGGcGCCGg -3'
miRNA:   3'- gaUG-GGCGu-CCu---CCGUGUGUUC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 18119 0.66 0.75279
Target:  5'- -aGCuCCGCGGcgguGGGGCGCGCGcgaaagucaaAGGUCAg -3'
miRNA:   3'- gaUG-GGCGUC----CUCCGUGUGU----------UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 4956 0.66 0.75279
Target:  5'- -cGCCCGUcucuucAGGccGGGCGCccGCGGGGUCGu -3'
miRNA:   3'- gaUGGGCG------UCC--UCCGUG--UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 134454 0.66 0.75279
Target:  5'- aCUugCgGCAGGGcaagauGGCAUagGCGcGGCCAa -3'
miRNA:   3'- -GAugGgCGUCCU------CCGUG--UGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 96187 0.66 0.75279
Target:  5'- -gGCCgGCAGc-GGCAaugGCGGGGCCGg -3'
miRNA:   3'- gaUGGgCGUCcuCCGUg--UGUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 5662 0.66 0.75279
Target:  5'- -gGCCCGCcc-AGGCGCGaagguGGGCCGg -3'
miRNA:   3'- gaUGGGCGuccUCCGUGUgu---UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 72202 0.66 0.75279
Target:  5'- cCUACuCCGgGucgcGGAGGCaggGCACGcccGGGCCGu -3'
miRNA:   3'- -GAUG-GGCgU----CCUCCG---UGUGU---UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 74829 0.66 0.75279
Target:  5'- -cGCgaGCAGGuGGCGCGCGcGcGCCGc -3'
miRNA:   3'- gaUGggCGUCCuCCGUGUGUuC-CGGU- -5'
6679 3' -58.4 NC_001847.1 + 11360 0.66 0.75279
Target:  5'- -cGCCgCGCAGGccccgAGGCcaauGCAaguCAGGGCCGc -3'
miRNA:   3'- gaUGG-GCGUCC-----UCCG----UGU---GUUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 69568 0.66 0.75279
Target:  5'- gUGCCU--GGGGGGC-CACGuGGCCGu -3'
miRNA:   3'- gAUGGGcgUCCUCCGuGUGUuCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 87859 0.66 0.75279
Target:  5'- -gGCCCGCGGGccuguGGU-CGCuguGGCCGc -3'
miRNA:   3'- gaUGGGCGUCCu----CCGuGUGuu-CCGGU- -5'
6679 3' -58.4 NC_001847.1 + 57022 0.66 0.75279
Target:  5'- gUGCCUGCugcagaacaAGGAGcGCGCcCuguGGGCCGa -3'
miRNA:   3'- gAUGGGCG---------UCCUC-CGUGuGu--UCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 88721 0.66 0.746991
Target:  5'- -cGCCCG-AGGAGGCugugcugcucgauaaGCAgcAGGCCGc -3'
miRNA:   3'- gaUGGGCgUCCUCCG---------------UGUguUCCGGU- -5'
6679 3' -58.4 NC_001847.1 + 95316 0.66 0.743104
Target:  5'- -cGCCaCGCAGGAaGCGCuc-GGGCCc -3'
miRNA:   3'- gaUGG-GCGUCCUcCGUGuguUCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.