Results 41 - 60 of 340 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6679 | 3' | -58.4 | NC_001847.1 | + | 13438 | 0.66 | 0.761416 |
Target: 5'- -gGCCUGCGcuGGcuguaucuagcGGGCGCGCAccugcucGGGCCGc -3' miRNA: 3'- gaUGGGCGU--CC-----------UCCGUGUGU-------UCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 54466 | 0.66 | 0.759507 |
Target: 5'- -aGCCCgaggaggaggGCGGGAcggacaacgacggcGGCGC-CGGGGCCGg -3' miRNA: 3'- gaUGGG----------CGUCCU--------------CCGUGuGUUCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 58225 | 0.66 | 0.75279 |
Target: 5'- uCUGCCCGCcGGGcggcagcggcGGCGCGCGAccGCCc -3' miRNA: 3'- -GAUGGGCGuCCU----------CCGUGUGUUc-CGGu -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 108475 | 0.66 | 0.75279 |
Target: 5'- -gGCCCGCcc-AGGCGCGaagguGGGCCGg -3' miRNA: 3'- gaUGGGCGuccUCCGUGUgu---UCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 60860 | 0.66 | 0.75279 |
Target: 5'- -cGCCCGCc-GAGGCcaGCGCAgcgcgcgcgcGGGCCc -3' miRNA: 3'- gaUGGGCGucCUCCG--UGUGU----------UCCGGu -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 134188 | 0.66 | 0.75279 |
Target: 5'- -cGCCCgGCGcagcguGGAgcGGCGCGCGcGGGCCGa -3' miRNA: 3'- gaUGGG-CGU------CCU--CCGUGUGU-UCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 100505 | 0.66 | 0.75279 |
Target: 5'- -cGCgCCGCucGGccucGGCGCGCAGGcGCCGg -3' miRNA: 3'- gaUG-GGCGu-CCu---CCGUGUGUUC-CGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 18119 | 0.66 | 0.75279 |
Target: 5'- -aGCuCCGCGGcgguGGGGCGCGCGcgaaagucaaAGGUCAg -3' miRNA: 3'- gaUG-GGCGUC----CUCCGUGUGU----------UCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 4956 | 0.66 | 0.75279 |
Target: 5'- -cGCCCGUcucuucAGGccGGGCGCccGCGGGGUCGu -3' miRNA: 3'- gaUGGGCG------UCC--UCCGUG--UGUUCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 134454 | 0.66 | 0.75279 |
Target: 5'- aCUugCgGCAGGGcaagauGGCAUagGCGcGGCCAa -3' miRNA: 3'- -GAugGgCGUCCU------CCGUG--UGUuCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 96187 | 0.66 | 0.75279 |
Target: 5'- -gGCCgGCAGc-GGCAaugGCGGGGCCGg -3' miRNA: 3'- gaUGGgCGUCcuCCGUg--UGUUCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 5662 | 0.66 | 0.75279 |
Target: 5'- -gGCCCGCcc-AGGCGCGaagguGGGCCGg -3' miRNA: 3'- gaUGGGCGuccUCCGUGUgu---UCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 72202 | 0.66 | 0.75279 |
Target: 5'- cCUACuCCGgGucgcGGAGGCaggGCACGcccGGGCCGu -3' miRNA: 3'- -GAUG-GGCgU----CCUCCG---UGUGU---UCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 74829 | 0.66 | 0.75279 |
Target: 5'- -cGCgaGCAGGuGGCGCGCGcGcGCCGc -3' miRNA: 3'- gaUGggCGUCCuCCGUGUGUuC-CGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 11360 | 0.66 | 0.75279 |
Target: 5'- -cGCCgCGCAGGccccgAGGCcaauGCAaguCAGGGCCGc -3' miRNA: 3'- gaUGG-GCGUCC-----UCCG----UGU---GUUCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 69568 | 0.66 | 0.75279 |
Target: 5'- gUGCCU--GGGGGGC-CACGuGGCCGu -3' miRNA: 3'- gAUGGGcgUCCUCCGuGUGUuCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 87859 | 0.66 | 0.75279 |
Target: 5'- -gGCCCGCGGGccuguGGU-CGCuguGGCCGc -3' miRNA: 3'- gaUGGGCGUCCu----CCGuGUGuu-CCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 57022 | 0.66 | 0.75279 |
Target: 5'- gUGCCUGCugcagaacaAGGAGcGCGCcCuguGGGCCGa -3' miRNA: 3'- gAUGGGCG---------UCCUC-CGUGuGu--UCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 88721 | 0.66 | 0.746991 |
Target: 5'- -cGCCCG-AGGAGGCugugcugcucgauaaGCAgcAGGCCGc -3' miRNA: 3'- gaUGGGCgUCCUCCG---------------UGUguUCCGGU- -5' |
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6679 | 3' | -58.4 | NC_001847.1 | + | 95316 | 0.66 | 0.743104 |
Target: 5'- -cGCCaCGCAGGAaGCGCuc-GGGCCc -3' miRNA: 3'- gaUGG-GCGUCCUcCGUGuguUCCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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