miRNA display CGI


Results 21 - 40 of 1312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6680 5' -63 NC_001847.1 + 133295 0.67 0.493325
Target:  5'- aCUCGCAcGCcuGGGCcgggcgcuggacgGGCGCGCcggacguGAGCGCg -3'
miRNA:   3'- -GAGCGU-CG--CUCG-------------CCGCGCG-------CUCGCGg -5'
6680 5' -63 NC_001847.1 + 133257 0.73 0.219501
Target:  5'- gCUCGCGGCGcugGGCaaccGGCuGCuGCuGAGCGCCg -3'
miRNA:   3'- -GAGCGUCGC---UCG----CCG-CG-CG-CUCGCGG- -5'
6680 5' -63 NC_001847.1 + 133214 0.66 0.600227
Target:  5'- --gGCGGCccGAGUGGC-CGCc-GCGCCg -3'
miRNA:   3'- gagCGUCG--CUCGCCGcGCGcuCGCGG- -5'
6680 5' -63 NC_001847.1 + 133182 0.7 0.359749
Target:  5'- gCUgGCGGCGccgccCGGCGagGaCGAGCGCCg -3'
miRNA:   3'- -GAgCGUCGCuc---GCCGCg-C-GCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 133090 0.67 0.504418
Target:  5'- -cCGCuGCG-GCGGCGCGUG-GC-CUg -3'
miRNA:   3'- gaGCGuCGCuCGCCGCGCGCuCGcGG- -5'
6680 5' -63 NC_001847.1 + 133045 0.68 0.458976
Target:  5'- aUCGCGGCccGCcGcCGCGCGGGCcCCg -3'
miRNA:   3'- gAGCGUCGcuCGcC-GCGCGCUCGcGG- -5'
6680 5' -63 NC_001847.1 + 132987 0.67 0.495166
Target:  5'- -gCGCuGCGAGaccuGGUGCuGCGcAGCGCa -3'
miRNA:   3'- gaGCGuCGCUCg---CCGCG-CGC-UCGCGg -5'
6680 5' -63 NC_001847.1 + 132829 0.69 0.39925
Target:  5'- -gCGCAGCGGGCGuGuCGCcaUGGGCaGCCg -3'
miRNA:   3'- gaGCGUCGCUCGC-C-GCGc-GCUCG-CGG- -5'
6680 5' -63 NC_001847.1 + 132794 0.74 0.194951
Target:  5'- -aCGCGGcCGGGcCGGCGCGgCGGGaGCCg -3'
miRNA:   3'- gaGCGUC-GCUC-GCCGCGC-GCUCgCGG- -5'
6680 5' -63 NC_001847.1 + 132721 0.73 0.218985
Target:  5'- -gCGCgaagcuuGGCGaAGCGGCGCaGCGAGCcacgGCCg -3'
miRNA:   3'- gaGCG-------UCGC-UCGCCGCG-CGCUCG----CGG- -5'
6680 5' -63 NC_001847.1 + 132700 0.67 0.529753
Target:  5'- --gGaCGGCGAgGCGGCGgcccugccggccgcCGCGGGgGCCc -3'
miRNA:   3'- gagC-GUCGCU-CGCCGC--------------GCGCUCgCGG- -5'
6680 5' -63 NC_001847.1 + 132654 0.68 0.458976
Target:  5'- cCUCGCGaCGucuucacaCGGCgGCGgGGGCGCCg -3'
miRNA:   3'- -GAGCGUcGCuc------GCCG-CGCgCUCGCGG- -5'
6680 5' -63 NC_001847.1 + 132556 0.77 0.128671
Target:  5'- gCUCGCGuGCGgccgcGGCGGcCGCGCaGGCGCCc -3'
miRNA:   3'- -GAGCGU-CGC-----UCGCC-GCGCGcUCGCGG- -5'
6680 5' -63 NC_001847.1 + 132375 0.71 0.32306
Target:  5'- -cCGcCGGCGGG-GGCGCcgGCGccGGCGCCg -3'
miRNA:   3'- gaGC-GUCGCUCgCCGCG--CGC--UCGCGG- -5'
6680 5' -63 NC_001847.1 + 132341 0.7 0.344732
Target:  5'- -gCGCGGCuGGCGGcCGCGCucGCgGCCc -3'
miRNA:   3'- gaGCGUCGcUCGCC-GCGCGcuCG-CGG- -5'
6680 5' -63 NC_001847.1 + 132268 0.74 0.199661
Target:  5'- -gCGCGGCGcGGCGGCccGCGCGucggccugGGCGCUg -3'
miRNA:   3'- gaGCGUCGC-UCGCCG--CGCGC--------UCGCGG- -5'
6680 5' -63 NC_001847.1 + 132171 0.71 0.316066
Target:  5'- -gCGCGGCcccGGCGGCGC-UGcGCGCCg -3'
miRNA:   3'- gaGCGUCGc--UCGCCGCGcGCuCGCGG- -5'
6680 5' -63 NC_001847.1 + 132144 0.67 0.523137
Target:  5'- -aCGCGGUgGAGC-GCGCGCG-GCuCCa -3'
miRNA:   3'- gaGCGUCG-CUCGcCGCGCGCuCGcGG- -5'
6680 5' -63 NC_001847.1 + 132039 0.7 0.337393
Target:  5'- -cCGCGGCGGGCcgcggccugccGGC-CGCGGccugcGCGCCg -3'
miRNA:   3'- gaGCGUCGCUCG-----------CCGcGCGCU-----CGCGG- -5'
6680 5' -63 NC_001847.1 + 131955 0.66 0.600227
Target:  5'- aUgGCGGCGA-CGGCG-GCGAGaGCg -3'
miRNA:   3'- gAgCGUCGCUcGCCGCgCGCUCgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.