Results 21 - 40 of 619 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6681 | 3' | -56.6 | NC_001847.1 | + | 37445 | 0.66 | 0.872007 |
Target: 5'- aCGACGGcGAGCgcagcaGCGgGCcUGCGuuGg -3' miRNA: 3'- cGCUGCCaUUUGa-----CGCgCG-ACGCggC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 89878 | 0.66 | 0.876355 |
Target: 5'- cGCGGCGGgcuucgcCGCGCUcaCGCCGg -3' miRNA: 3'- -CGCUGCCauuugacGCGCGAc-GCGGC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 90697 | 0.66 | 0.87921 |
Target: 5'- cGCG-CGcGU--GCcGCGCGCcGCGCCc -3' miRNA: 3'- -CGCuGC-CAuuUGaCGCGCGaCGCGGc -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 114953 | 0.66 | 0.886194 |
Target: 5'- -aGGCGGUGGuauucgcauACcgGCGCGCccguugccugaGCGCCGa -3' miRNA: 3'- cgCUGCCAUU---------UGa-CGCGCGa----------CGCGGC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 85667 | 0.66 | 0.856963 |
Target: 5'- cGCGGCcGU--GCUgGCGCGCagGCGCUc -3' miRNA: 3'- -CGCUGcCAuuUGA-CGCGCGa-CGCGGc -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 23019 | 0.66 | 0.864589 |
Target: 5'- gGCuGgGGUGGGCUGgGCuggGCUGgGCUGg -3' miRNA: 3'- -CGcUgCCAUUUGACgCG---CGACgCGGC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 13006 | 0.66 | 0.87921 |
Target: 5'- cGCGGCGcc---CUGCGCGCcG-GCCGu -3' miRNA: 3'- -CGCUGCcauuuGACGCGCGaCgCGGC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 132143 | 0.66 | 0.886194 |
Target: 5'- gGCGGCGcu--GCUGcCGCGCagggugGgGCCGg -3' miRNA: 3'- -CGCUGCcauuUGAC-GCGCGa-----CgCGGC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 104746 | 0.66 | 0.864589 |
Target: 5'- cCGGCGGccAGCgccaGCGcCGuCUGCGCCc -3' miRNA: 3'- cGCUGCCauUUGa---CGC-GC-GACGCGGc -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 116657 | 0.66 | 0.886194 |
Target: 5'- cGCGGgcacgcUGGUGGcCUGCGUGUggguccgGCGCUGc -3' miRNA: 3'- -CGCU------GCCAUUuGACGCGCGa------CGCGGC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 131392 | 0.66 | 0.877072 |
Target: 5'- uCGACGGcGAcgaagcgcugcacgGCcGCGUGC-GCGCCGu -3' miRNA: 3'- cGCUGCCaUU--------------UGaCGCGCGaCGCGGC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 127781 | 0.66 | 0.872007 |
Target: 5'- aGCGGCGccGgcAGCaGCGCGCUGacgGCUa -3' miRNA: 3'- -CGCUGC--CauUUGaCGCGCGACg--CGGc -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 108058 | 0.66 | 0.87921 |
Target: 5'- gGCGACGccuccAGCgUGgGCGCgGUGCCGc -3' miRNA: 3'- -CGCUGCcau--UUG-ACgCGCGaCGCGGC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 88099 | 0.66 | 0.87921 |
Target: 5'- uCGGCGGUG----GCGCgGCUG-GCCGg -3' miRNA: 3'- cGCUGCCAUuugaCGCG-CGACgCGGC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 25991 | 0.66 | 0.886194 |
Target: 5'- -gGGCGGgcgGGCggGCGCGCagGCGCg- -3' miRNA: 3'- cgCUGCCau-UUGa-CGCGCGa-CGCGgc -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 108447 | 0.66 | 0.886194 |
Target: 5'- -gGACGccGAGCUGCG-GCUGgagccCGCCGg -3' miRNA: 3'- cgCUGCcaUUUGACGCgCGAC-----GCGGC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 61453 | 0.66 | 0.856963 |
Target: 5'- gGCG-CGGcgAGGCggucGCGCaGCaGCGCCGc -3' miRNA: 3'- -CGCuGCCa-UUUGa---CGCG-CGaCGCGGC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 67682 | 0.66 | 0.856963 |
Target: 5'- cGCcGCGGcc-GCcGCGCGC-GCGCUGg -3' miRNA: 3'- -CGcUGCCauuUGaCGCGCGaCGCGGC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 61300 | 0.66 | 0.86308 |
Target: 5'- cGCGGCGGcguuuuuaUGCGCgGgUGCGCgGg -3' miRNA: 3'- -CGCUGCCauuug---ACGCG-CgACGCGgC- -5' |
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6681 | 3' | -56.6 | NC_001847.1 | + | 22979 | 0.66 | 0.864589 |
Target: 5'- gGCuGgGGUGGGCUGgGCuggGCUGgGCUGg -3' miRNA: 3'- -CGcUgCCAUUUGACgCG---CGACgCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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