miRNA display CGI


Results 1 - 20 of 296 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6681 5' -52.7 NC_001847.1 + 56893 0.66 0.977845
Target:  5'- cGCCG-GCga-CGGCGaCGccgGCGGGCg -3'
miRNA:   3'- -CGGCaCGagaGCCGC-GCaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 134649 0.66 0.977845
Target:  5'- gGCCG-GCagcaGGCGCGgaggcGCGGGCa -3'
miRNA:   3'- -CGGCaCGagagCCGCGCaaa--UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 106321 0.66 0.977845
Target:  5'- cGCCGUcacGCUCcCGGUGauga-ACGAGCu -3'
miRNA:   3'- -CGGCA---CGAGaGCCGCgcaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 67430 0.66 0.977845
Target:  5'- gGCCagcUGCUa-CGGCGCGcu--CGAGCa -3'
miRNA:   3'- -CGGc--ACGAgaGCCGCGCaaauGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 56087 0.66 0.977845
Target:  5'- cCCG-GCUC-CGGCGCcgcguUAAGCg -3'
miRNA:   3'- cGGCaCGAGaGCCGCGcaaauGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 3508 0.66 0.977845
Target:  5'- cGCCGUcacGCUCcCGGUGauga-ACGAGCu -3'
miRNA:   3'- -CGGCA---CGAGaGCCGCgcaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 129503 0.66 0.977845
Target:  5'- cGCUGgacggGCUCuUUGGCGCGc--GCGGGa -3'
miRNA:   3'- -CGGCa----CGAG-AGCCGCGCaaaUGUUCg -5'
6681 5' -52.7 NC_001847.1 + 119252 0.66 0.977845
Target:  5'- gGCCGUcgauagcgaGCUCgUCGGCGCuGUcg--GAGCu -3'
miRNA:   3'- -CGGCA---------CGAG-AGCCGCG-CAaaugUUCG- -5'
6681 5' -52.7 NC_001847.1 + 41625 0.66 0.977845
Target:  5'- cGCCGUGauggccgCgagCGGCGCGccgGgGGGCc -3'
miRNA:   3'- -CGGCACga-----Ga--GCCGCGCaaaUgUUCG- -5'
6681 5' -52.7 NC_001847.1 + 53807 0.66 0.977845
Target:  5'- cGCaCGUGCaa--GGCGUGUc-GCGGGCg -3'
miRNA:   3'- -CG-GCACGagagCCGCGCAaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 76511 0.66 0.977845
Target:  5'- cCCGUGUUCgCGGCcuaCGUccccGCGGGCg -3'
miRNA:   3'- cGGCACGAGaGCCGc--GCAaa--UGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 103245 0.66 0.977603
Target:  5'- gGCCGUGaUCUgCGGCggcauccGCGcg-ACGGGCu -3'
miRNA:   3'- -CGGCACgAGA-GCCG-------CGCaaaUGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 42703 0.66 0.975597
Target:  5'- cGCCGUGUgucgcacgauugaugCUuacCGGCGCGaguuCGGGCu -3'
miRNA:   3'- -CGGCACGa--------------GA---GCCGCGCaaauGUUCG- -5'
6681 5' -52.7 NC_001847.1 + 31692 0.66 0.975337
Target:  5'- gGCCGUGUcugcgCUguaCGGCGCGa--GCGAGa -3'
miRNA:   3'- -CGGCACGa----GA---GCCGCGCaaaUGUUCg -5'
6681 5' -52.7 NC_001847.1 + 108703 0.66 0.975337
Target:  5'- cGCCccUGC-CUCGcGCGCGUUgguCuGGCa -3'
miRNA:   3'- -CGGc-ACGaGAGC-CGCGCAAau-GuUCG- -5'
6681 5' -52.7 NC_001847.1 + 82867 0.66 0.975337
Target:  5'- gGCaCGUGCUCgcccgugCgGGCGCGccgcagcCAAGCc -3'
miRNA:   3'- -CG-GCACGAGa------G-CCGCGCaaau---GUUCG- -5'
6681 5' -52.7 NC_001847.1 + 111287 0.66 0.975337
Target:  5'- gGCCGgggGCggcgCUCGGC-CGgggGCGGGg -3'
miRNA:   3'- -CGGCa--CGa---GAGCCGcGCaaaUGUUCg -5'
6681 5' -52.7 NC_001847.1 + 27422 0.66 0.975337
Target:  5'- cGCCGgcGCggUCGGUGuCGUUcGCAgcGGCg -3'
miRNA:   3'- -CGGCa-CGagAGCCGC-GCAAaUGU--UCG- -5'
6681 5' -52.7 NC_001847.1 + 130235 0.66 0.975337
Target:  5'- cGCCGgcGCggUCGGUGuCGUUcGCAgcGGCg -3'
miRNA:   3'- -CGGCa-CGagAGCCGC-GCAAaUGU--UCG- -5'
6681 5' -52.7 NC_001847.1 + 8474 0.66 0.975337
Target:  5'- gGCCGgggGCggcgCUCGGC-CGgggGCGGGg -3'
miRNA:   3'- -CGGCa--CGa---GAGCCGcGCaaaUGUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.