miRNA display CGI


Results 21 - 40 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6682 3' -61.7 NC_001847.1 + 129295 0.66 0.575652
Target:  5'- cUGGUAg-GGGCgggCCUGGUgcAAGGCGg -3'
miRNA:   3'- -ACCGUgaCCCGa--GGGCCGguUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 128229 0.66 0.603516
Target:  5'- gGGCcaggGGGCUaugcaaauuaaaCCGGgCAGGGGCGa -3'
miRNA:   3'- aCCGuga-CCCGAg-----------GGCCgGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 127331 0.67 0.517119
Target:  5'- cGGCGCcGaGGCggCCGGCUgccgcggcAGGGGCGg -3'
miRNA:   3'- aCCGUGaC-CCGagGGCCGG--------UUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 125547 0.67 0.5364
Target:  5'- cGGUcguccccgcgGCUGcGGCUCgaucgCGGCCGcGGGCGg -3'
miRNA:   3'- aCCG----------UGAC-CCGAGg----GCCGGUuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 125395 0.67 0.546135
Target:  5'- gGGCGCcccgGGGCagggcccgCCCGGUCGcguGGCa -3'
miRNA:   3'- aCCGUGa---CCCGa-------GGGCCGGUuu-CCGc -5'
6682 3' -61.7 NC_001847.1 + 125081 0.77 0.125886
Target:  5'- gGGCGCUGGGCccgCgCGGCCAAGaugucguucgcGGCGg -3'
miRNA:   3'- aCCGUGACCCGa--GgGCCGGUUU-----------CCGC- -5'
6682 3' -61.7 NC_001847.1 + 124772 0.67 0.5364
Target:  5'- cGGCACcgggggGGGCUUUCGGC----GGCGg -3'
miRNA:   3'- aCCGUGa-----CCCGAGGGCCGguuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 124585 0.72 0.287948
Target:  5'- cGGCGCcGGGCccggCgCCGGCC--GGGCGc -3'
miRNA:   3'- aCCGUGaCCCGa---G-GGCCGGuuUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 124544 0.66 0.625527
Target:  5'- gGGCGC-GGGCcggCgCCGGCCcgcgcgcgcggGGGGGCc -3'
miRNA:   3'- aCCGUGaCCCGa--G-GGCCGG-----------UUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 124448 0.7 0.390958
Target:  5'- cGGCGC-GGGCcgcgCCCGGgCGcgaccggAGGGCGa -3'
miRNA:   3'- aCCGUGaCCCGa---GGGCCgGU-------UUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 123850 0.67 0.555926
Target:  5'- cGGCcCUGaGGCcccgagaccCCCGGCCcuGAGGCc -3'
miRNA:   3'- aCCGuGAC-CCGa--------GGGCCGGu-UUCCGc -5'
6682 3' -61.7 NC_001847.1 + 123632 0.71 0.344442
Target:  5'- cGGC-CgGGGCggcgCCCuuGGCUGAAGGCGc -3'
miRNA:   3'- aCCGuGaCCCGa---GGG--CCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 123062 0.67 0.517119
Target:  5'- gGGCGCcGGacccgcggcGCUCCgCGGCCuc-GGCGu -3'
miRNA:   3'- aCCGUGaCC---------CGAGG-GCCGGuuuCCGC- -5'
6682 3' -61.7 NC_001847.1 + 122407 0.77 0.131108
Target:  5'- aGGCGCUGGGCcgcaCCCGGCCcuccaaaauccuGGGCa -3'
miRNA:   3'- aCCGUGACCCGa---GGGCCGGuu----------UCCGc -5'
6682 3' -61.7 NC_001847.1 + 121258 1.07 0.000897
Target:  5'- gUGGCACUGGGCUCCCGGCCAAAGGCGc -3'
miRNA:   3'- -ACCGUGACCCGAGGGCCGGUUUCCGC- -5'
6682 3' -61.7 NC_001847.1 + 120320 0.72 0.27438
Target:  5'- cGGCugauuuucCUGGaacaccaGCUCCCGGCCGGGcGGCGc -3'
miRNA:   3'- aCCGu-------GACC-------CGAGGGCCGGUUU-CCGC- -5'
6682 3' -61.7 NC_001847.1 + 119541 0.68 0.487806
Target:  5'- cGGCagGCUGGGCaaggggcgCgCGGCCAGAcucugcgggcagcGGCGg -3'
miRNA:   3'- aCCG--UGACCCGa-------GgGCCGGUUU-------------CCGC- -5'
6682 3' -61.7 NC_001847.1 + 119273 0.68 0.488739
Target:  5'- cGGCGCUgucGGaGCUgCCGucuucggcgaacGCCGAGGGCa -3'
miRNA:   3'- aCCGUGA---CC-CGAgGGC------------CGGUUUCCGc -5'
6682 3' -61.7 NC_001847.1 + 118951 0.71 0.342185
Target:  5'- aUGGCGCgggccaguuccgauUcGGGgUCCgCGGCCAAcgGGGCGg -3'
miRNA:   3'- -ACCGUG--------------A-CCCgAGG-GCCGGUU--UCCGC- -5'
6682 3' -61.7 NC_001847.1 + 118435 0.7 0.375537
Target:  5'- cGGCGCcgugGGGCUCCUG-CUGGuGGCGg -3'
miRNA:   3'- aCCGUGa---CCCGAGGGCcGGUUuCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.