miRNA display CGI


Results 21 - 40 of 884 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6683 3' -66.4 NC_001847.1 + 133209 0.67 0.384254
Target:  5'- gCGCCGGCGgcccgaGuGGCCgCCGcGCCGCGgCGg -3'
miRNA:   3'- -GCGGUCGCg-----C-CUGG-GGC-CGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 133173 0.67 0.384254
Target:  5'- uGCUAccuGCGCGGGCgCgGGCUGC-CCu -3'
miRNA:   3'- gCGGU---CGCGCCUGgGgCCGGCGuGGu -5'
6683 3' -66.4 NC_001847.1 + 133088 0.67 0.361292
Target:  5'- gCGCCuGCGCaccaaaGACCCuaucguggccaCGGCCGgCGCCGu -3'
miRNA:   3'- -GCGGuCGCGc-----CUGGG-----------GCCGGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 133053 0.79 0.05951
Target:  5'- cCGCCGccGCGCGGGCCCCGcggggcgcucGCCGcCACCGc -3'
miRNA:   3'- -GCGGU--CGCGCCUGGGGC----------CGGC-GUGGU- -5'
6683 3' -66.4 NC_001847.1 + 132830 0.68 0.31152
Target:  5'- cCGCCcGCGUgcugGGGCCCauGCCGC-CCGg -3'
miRNA:   3'- -GCGGuCGCG----CCUGGGgcCGGCGuGGU- -5'
6683 3' -66.4 NC_001847.1 + 132605 0.69 0.29184
Target:  5'- cCGCCGGagagcaGCGGuCCCgCGGCCcgGCAgCAa -3'
miRNA:   3'- -GCGGUCg-----CGCCuGGG-GCCGG--CGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 132543 0.66 0.441447
Target:  5'- -uCCGGCGCGGcggGCUCgcgugCGGCCGCGgCGg -3'
miRNA:   3'- gcGGUCGCGCC---UGGG-----GCCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 132455 0.66 0.441447
Target:  5'- aGCUggagGGCGCGGAggacgagccgaUgCCGGCCGaGCCGc -3'
miRNA:   3'- gCGG----UCGCGCCU-----------GgGGCCGGCgUGGU- -5'
6683 3' -66.4 NC_001847.1 + 132375 0.78 0.065856
Target:  5'- cCGCCGGCGgGGGCgCCGGCgccggcgccgcCGCGCCGg -3'
miRNA:   3'- -GCGGUCGCgCCUGgGGCCG-----------GCGUGGU- -5'
6683 3' -66.4 NC_001847.1 + 132336 0.75 0.111324
Target:  5'- uGCCGGCGCGG-CUggCGGCCGCGCUc -3'
miRNA:   3'- gCGGUCGCGCCuGGg-GCCGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 132266 0.68 0.31152
Target:  5'- aCGCgCGGCGCGGcgGCCCgcgcguCGGCCuggGCGCUg -3'
miRNA:   3'- -GCG-GUCGCGCC--UGGG------GCCGG---CGUGGu -5'
6683 3' -66.4 NC_001847.1 + 132224 0.72 0.176378
Target:  5'- gCGCUggcGGCGCGGACCgUGGCCcCGCUc -3'
miRNA:   3'- -GCGG---UCGCGCCUGGgGCCGGcGUGGu -5'
6683 3' -66.4 NC_001847.1 + 132165 0.81 0.039561
Target:  5'- -uCCAGCGCGcGGCCCCGGCgGCGCUg -3'
miRNA:   3'- gcGGUCGCGC-CUGGGGCCGgCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 132057 0.67 0.376493
Target:  5'- uGCCGGcCGCGGccugcGCgCCGGaCGCGCUg -3'
miRNA:   3'- gCGGUC-GCGCC-----UGgGGCCgGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 132006 0.72 0.172239
Target:  5'- cCGCCGGCGCcgccGGGCUCCcggugcucucGGCCGCGgCGg -3'
miRNA:   3'- -GCGGUCGCG----CCUGGGG----------CCGGCGUgGU- -5'
6683 3' -66.4 NC_001847.1 + 131944 0.69 0.267132
Target:  5'- gCGCgAGCugGCGGACCgCUGcGCCGuCGCCu -3'
miRNA:   3'- -GCGgUCG--CGCCUGG-GGC-CGGC-GUGGu -5'
6683 3' -66.4 NC_001847.1 + 131891 0.67 0.353853
Target:  5'- gCGCCGGCGCcccuGCCgCCGGCgaGCACg- -3'
miRNA:   3'- -GCGGUCGCGcc--UGG-GGCCGg-CGUGgu -5'
6683 3' -66.4 NC_001847.1 + 131856 0.67 0.383473
Target:  5'- uCGCCgAGCuGCGcGCCgugcucgCCGGCCGCGCg- -3'
miRNA:   3'- -GCGG-UCG-CGCcUGG-------GGCCGGCGUGgu -5'
6683 3' -66.4 NC_001847.1 + 131826 0.72 0.176378
Target:  5'- gCGCCGGCggcaGCGG-CgCCCGcGCCGCGCUc -3'
miRNA:   3'- -GCGGUCG----CGCCuG-GGGC-CGGCGUGGu -5'
6683 3' -66.4 NC_001847.1 + 131681 0.68 0.304189
Target:  5'- gCGCCGGCGCGcgcuugcugucGAcuuccgccucgacCCCCugGGCUGCGCCu -3'
miRNA:   3'- -GCGGUCGCGC-----------CU-------------GGGG--CCGGCGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.