miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6684 3' -59.2 NC_001847.1 + 90831 0.66 0.769121
Target:  5'- --aGgcGGGGCgagaucagCGA-GCGGCGCCCCg -3'
miRNA:   3'- cgaCuaCUCCG--------GCUaCGUCGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 101903 0.66 0.769121
Target:  5'- gGCaGcgGAGG-CGccGCGGCGCCCg- -3'
miRNA:   3'- -CGaCuaCUCCgGCuaCGUCGCGGGgg -5'
6684 3' -59.2 NC_001847.1 + 111299 0.66 0.769121
Target:  5'- cGCUc----GGCCGGggGCGGgGCCCCUu -3'
miRNA:   3'- -CGAcuacuCCGGCUa-CGUCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 85495 0.66 0.769121
Target:  5'- cGCgGAgaAGGCCGcUGUggucGGCGUCUCCa -3'
miRNA:   3'- -CGaCUacUCCGGCuACG----UCGCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 56791 0.66 0.769121
Target:  5'- cGCUcGA-GGGGCUGuucgccgccGCGGCGCCCaagCCg -3'
miRNA:   3'- -CGA-CUaCUCCGGCua-------CGUCGCGGG---GG- -5'
6684 3' -59.2 NC_001847.1 + 85770 0.66 0.769121
Target:  5'- cGCcGggGGcagcGGCCGAUGCGGUGCgCgUCg -3'
miRNA:   3'- -CGaCuaCU----CCGGCUACGUCGCG-GgGG- -5'
6684 3' -59.2 NC_001847.1 + 18681 0.66 0.769121
Target:  5'- cGCUGAgcaGAaccGcGCCGcgcGUGCgccAGCGCCCaCCg -3'
miRNA:   3'- -CGACUa--CU---C-CGGC---UACG---UCGCGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 72609 0.66 0.769121
Target:  5'- cGCUGcu--GGCCGcacgGCAcGUGCCgCCCg -3'
miRNA:   3'- -CGACuacuCCGGCua--CGU-CGCGG-GGG- -5'
6684 3' -59.2 NC_001847.1 + 8486 0.66 0.769121
Target:  5'- cGCUc----GGCCGGggGCGGgGCCCCUu -3'
miRNA:   3'- -CGAcuacuCCGGCUa-CGUCgCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 58534 0.66 0.769121
Target:  5'- --cGAaGAGGCCGccGCGGUcuucGCCgCCg -3'
miRNA:   3'- cgaCUaCUCCGGCuaCGUCG----CGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 126782 0.66 0.759763
Target:  5'- cGUUGGUGguugccauGGGCCGGcuUGGCGCCaguCCCa -3'
miRNA:   3'- -CGACUAC--------UCCGGCUacGUCGCGG---GGG- -5'
6684 3' -59.2 NC_001847.1 + 42452 0.66 0.759763
Target:  5'- cGCUcGUG-GGCagagGGUGCGuuccGCGCCCCg -3'
miRNA:   3'- -CGAcUACuCCGg---CUACGU----CGCGGGGg -5'
6684 3' -59.2 NC_001847.1 + 116602 0.66 0.759763
Target:  5'- cGCUGccgcucUGcGGCgCGGacgGCGGCGCgCCCg -3'
miRNA:   3'- -CGACu-----ACuCCG-GCUa--CGUCGCGgGGG- -5'
6684 3' -59.2 NC_001847.1 + 107133 0.66 0.759763
Target:  5'- gGCU-AUGAcGGCCGcuucggccGCGGcCGCCUCCg -3'
miRNA:   3'- -CGAcUACU-CCGGCua------CGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 37951 0.66 0.759763
Target:  5'- cGCUGAUcgcGAGcaaGCCGcuacGCAGCGCgCCg -3'
miRNA:   3'- -CGACUA---CUC---CGGCua--CGUCGCGgGGg -5'
6684 3' -59.2 NC_001847.1 + 94755 0.66 0.759763
Target:  5'- cGCgucuu-GGCCGggGCcGuCGCCCCCc -3'
miRNA:   3'- -CGacuacuCCGGCuaCGuC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 4320 0.66 0.759763
Target:  5'- gGCU-AUGAcGGCCGcuucggccGCGGcCGCCUCCg -3'
miRNA:   3'- -CGAcUACU-CCGGCua------CGUC-GCGGGGG- -5'
6684 3' -59.2 NC_001847.1 + 95360 0.66 0.759763
Target:  5'- aCUGGcgGGGGCUGGcgGCGgaccGCGCCgCCg -3'
miRNA:   3'- cGACUa-CUCCGGCUa-CGU----CGCGGgGG- -5'
6684 3' -59.2 NC_001847.1 + 4006 0.66 0.759763
Target:  5'- --cGcgGGGcGCCGGgccCGGCGCCCgCCu -3'
miRNA:   3'- cgaCuaCUC-CGGCUac-GUCGCGGG-GG- -5'
6684 3' -59.2 NC_001847.1 + 106819 0.66 0.759763
Target:  5'- --cGcgGGGcGCCGGgccCGGCGCCCgCCu -3'
miRNA:   3'- cgaCuaCUC-CGGCUac-GUCGCGGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.