miRNA display CGI


Results 1 - 20 of 487 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6689 3' -66.3 NC_001847.1 + 5156 0.66 0.481134
Target:  5'- cCCaCCGCgCGuGCCuuuuuuuuguuuuaCCGCGGCGcGGGAGa -3'
miRNA:   3'- -GG-GGCG-GC-CGGc-------------GGCGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 107969 0.66 0.481134
Target:  5'- cCCaCCGCgCGuGCCuuuuuuuuguuuuaCCGCGGCGcGGGAGa -3'
miRNA:   3'- -GG-GGCG-GC-CGGc-------------GGCGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 14303 0.66 0.481134
Target:  5'- gCgUgGCCGGCCGCcuCucggggccucaucgaGCGGCGGGcAGAGa -3'
miRNA:   3'- -GgGgCGGCCGGCG--G---------------CGCCGCUC-UCUC- -5'
6689 3' -66.3 NC_001847.1 + 39158 0.66 0.477615
Target:  5'- uCgCUGCCGGCCgcgcaGCCGCGGC-AGcGGc -3'
miRNA:   3'- -GgGGCGGCCGG-----CGGCGCCGcUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 48197 0.66 0.477615
Target:  5'- gCCgCGCCGGCgGCCaG-GGcCGAG-GAGc -3'
miRNA:   3'- -GGgGCGGCCGgCGG-CgCC-GCUCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 125412 0.66 0.477615
Target:  5'- gCCCGcCCGGUCG-CGUGGCaAGcGAGu -3'
miRNA:   3'- gGGGC-GGCCGGCgGCGCCGcUCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 95716 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 53954 0.66 0.477615
Target:  5'- gCgCGCCGGCuggCGCCGCcGCGAGcccuccGAGc -3'
miRNA:   3'- gGgGCGGCCG---GCGGCGcCGCUCu-----CUC- -5'
6689 3' -66.3 NC_001847.1 + 79789 0.66 0.477615
Target:  5'- gUCuuGCCGuGCCGCCGUGGUaccaGGAa -3'
miRNA:   3'- -GGggCGGC-CGGCGGCGCCGcuc-UCUc -5'
6689 3' -66.3 NC_001847.1 + 30855 0.66 0.477615
Target:  5'- gCCgCCGCugCGGCUcuGCCGCGGCGGc---- -3'
miRNA:   3'- -GG-GGCG--GCCGG--CGGCGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 95662 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 65855 0.66 0.477615
Target:  5'- gUCCGCCcGCaCGCCGCGuaGAG-GAa -3'
miRNA:   3'- gGGGCGGcCG-GCGGCGCcgCUCuCUc -5'
6689 3' -66.3 NC_001847.1 + 81435 0.66 0.477615
Target:  5'- gCCCCG-CGaGCCGCCGgCGGCGc----- -3'
miRNA:   3'- -GGGGCgGC-CGGCGGC-GCCGCucucuc -5'
6689 3' -66.3 NC_001847.1 + 95743 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 22599 0.66 0.477615
Target:  5'- gCCCGcCCGGUCG-CGUGGCaAGcGAGu -3'
miRNA:   3'- gGGGC-GGCCGGCgGCGCCGcUCuCUC- -5'
6689 3' -66.3 NC_001847.1 + 95689 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 95770 0.66 0.477615
Target:  5'- --gCGCgGGCCGCUcUGGCGcGGGGGg -3'
miRNA:   3'- gggGCGgCCGGCGGcGCCGCuCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 133668 0.66 0.477615
Target:  5'- gCCgCCGCugCGGCUcuGCCGCGGCGGc---- -3'
miRNA:   3'- -GG-GGCG--GCCGG--CGGCGCCGCUcucuc -5'
6689 3' -66.3 NC_001847.1 + 81307 0.66 0.476737
Target:  5'- cCCCgCGCCGGCucuucagcgccccCGCUcCGGCGcgccAGGGGGc -3'
miRNA:   3'- -GGG-GCGGCCG-------------GCGGcGCCGC----UCUCUC- -5'
6689 3' -66.3 NC_001847.1 + 104048 0.66 0.476737
Target:  5'- gCCCGCaggccagguacacCGGCCGCaGCGGCGcgccGAGc -3'
miRNA:   3'- gGGGCG-------------GCCGGCGgCGCCGCucu-CUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.