miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6728 5' -53.5 NC_001875.2 + 117329 0.65 0.949995
Target:  5'- gGCUUGaCACGGCGCggcgCgggcgaaccggcggGCCGGCUGgcCGUCg -3'
miRNA:   3'- -UGAAC-GUGUUGCG----G--------------UGGCCGAU--GUAG- -5'
6728 5' -53.5 NC_001875.2 + 90527 0.66 0.948242
Target:  5'- gGCgcGCGCGGCGUgucuuguguggucugCGCCGGCcggucggccaauuUGCAUCg -3'
miRNA:   3'- -UGaaCGUGUUGCG---------------GUGGCCG-------------AUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 8151 0.66 0.9469
Target:  5'- -gUUGCGCAAUcaGCCGCCGGU--CAa- -3'
miRNA:   3'- ugAACGUGUUG--CGGUGGCCGauGUag -5'
6728 5' -53.5 NC_001875.2 + 81299 0.66 0.9469
Target:  5'- ---aGaCACGcGCGCCGCCGGCgGCGc- -3'
miRNA:   3'- ugaaC-GUGU-UGCGGUGGCCGaUGUag -5'
6728 5' -53.5 NC_001875.2 + 98136 0.66 0.9469
Target:  5'- ---cGCGCAccguGCGCgGCCGGCagaacgGCGUUu -3'
miRNA:   3'- ugaaCGUGU----UGCGgUGGCCGa-----UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 98964 0.66 0.9469
Target:  5'- ---aGCGCAGCGCgGCgGGC-GCcgCg -3'
miRNA:   3'- ugaaCGUGUUGCGgUGgCCGaUGuaG- -5'
6728 5' -53.5 NC_001875.2 + 40314 0.66 0.942264
Target:  5'- --aUGCGCAucGCGUUGCCGGCcgUGCGg- -3'
miRNA:   3'- ugaACGUGU--UGCGGUGGCCG--AUGUag -5'
6728 5' -53.5 NC_001875.2 + 49325 0.66 0.942264
Target:  5'- -gUUGCACGG-GCCGCCcgaggagcGCUACAUUg -3'
miRNA:   3'- ugAACGUGUUgCGGUGGc-------CGAUGUAG- -5'
6728 5' -53.5 NC_001875.2 + 56239 0.66 0.942264
Target:  5'- aACUcGUAC-ACGCCggcGCgCGGCUGCAg- -3'
miRNA:   3'- -UGAaCGUGuUGCGG---UG-GCCGAUGUag -5'
6728 5' -53.5 NC_001875.2 + 29259 0.66 0.942264
Target:  5'- uGCgggUGCGCGGcCGCCgaccgcGCCGGCgggGCgcgGUCg -3'
miRNA:   3'- -UGa--ACGUGUU-GCGG------UGGCCGa--UG---UAG- -5'
6728 5' -53.5 NC_001875.2 + 64625 0.66 0.942264
Target:  5'- ---cGCGacuCGuCCACCGGCU-CGUCg -3'
miRNA:   3'- ugaaCGUguuGC-GGUGGCCGAuGUAG- -5'
6728 5' -53.5 NC_001875.2 + 49632 0.66 0.941786
Target:  5'- gACUUccaGCgGCGACacgagcgGCCGCCGGCgccCAUCg -3'
miRNA:   3'- -UGAA---CG-UGUUG-------CGGUGGCCGau-GUAG- -5'
6728 5' -53.5 NC_001875.2 + 11203 0.66 0.937372
Target:  5'- ---aGCACGACGCCgcGCCGGaCgagaaggcCGUCa -3'
miRNA:   3'- ugaaCGUGUUGCGG--UGGCC-Gau------GUAG- -5'
6728 5' -53.5 NC_001875.2 + 9892 0.66 0.937372
Target:  5'- ---cGUACAACgacaGUCGCCGGCUgGCGUUc -3'
miRNA:   3'- ugaaCGUGUUG----CGGUGGCCGA-UGUAG- -5'
6728 5' -53.5 NC_001875.2 + 45876 0.66 0.937372
Target:  5'- cGCgUGgACGugGCCAUCGGCagUGCGc- -3'
miRNA:   3'- -UGaACgUGUugCGGUGGCCG--AUGUag -5'
6728 5' -53.5 NC_001875.2 + 50985 0.66 0.937372
Target:  5'- ---cGCGCGACGCguugcUGCCGGuCUACAa- -3'
miRNA:   3'- ugaaCGUGUUGCG-----GUGGCC-GAUGUag -5'
6728 5' -53.5 NC_001875.2 + 118474 0.66 0.937372
Target:  5'- cACcUGCAgcGCGCgGCCGGCcGCcUCg -3'
miRNA:   3'- -UGaACGUguUGCGgUGGCCGaUGuAG- -5'
6728 5' -53.5 NC_001875.2 + 128668 0.66 0.937372
Target:  5'- --gUGCGCG--GCCGCCGGCU-CAc- -3'
miRNA:   3'- ugaACGUGUugCGGUGGCCGAuGUag -5'
6728 5' -53.5 NC_001875.2 + 129337 0.66 0.932224
Target:  5'- uACUUGCG--GCGCCGgCGGCgccugggGCAa- -3'
miRNA:   3'- -UGAACGUguUGCGGUgGCCGa------UGUag -5'
6728 5' -53.5 NC_001875.2 + 38469 0.66 0.932224
Target:  5'- uCUUGCA---UGCCGCCGGCcuUGUCg -3'
miRNA:   3'- uGAACGUguuGCGGUGGCCGauGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.