miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6729 3' -62.8 NC_001875.2 + 130615 0.66 0.595942
Target:  5'- aCGGCGCgugcuagcgGUGCGUCagCGGcGCCCUGgUg -3'
miRNA:   3'- -GUUGCGa--------CACGCGGa-GCC-CGGGGCgG- -5'
6729 3' -62.8 NC_001875.2 + 40239 0.66 0.595942
Target:  5'- uGGCGCgucaGCGCCgc-GGCCUCGUCg -3'
miRNA:   3'- gUUGCGaca-CGCGGagcCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 62556 0.66 0.595942
Target:  5'- aAACGUUGUGCGgg-UGGacuuGCCgCCGCCa -3'
miRNA:   3'- gUUGCGACACGCggaGCC----CGG-GGCGG- -5'
6729 3' -62.8 NC_001875.2 + 109878 0.66 0.595942
Target:  5'- uGGCGCUG-GCGCCgcccauCCCCGCg -3'
miRNA:   3'- gUUGCGACaCGCGGagccc-GGGGCGg -5'
6729 3' -62.8 NC_001875.2 + 10865 0.66 0.586137
Target:  5'- aCGACGCgGUGgcCGCgUCGguGGCgCUGCCg -3'
miRNA:   3'- -GUUGCGaCAC--GCGgAGC--CCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 131502 0.66 0.586137
Target:  5'- -cACGUUGUGCGCCUguuuuUGGcGCUCCa-- -3'
miRNA:   3'- guUGCGACACGCGGA-----GCC-CGGGGcgg -5'
6729 3' -62.8 NC_001875.2 + 36442 0.66 0.586137
Target:  5'- gGugGCUGcgGCGCaUUGGcGCUCCGUUg -3'
miRNA:   3'- gUugCGACa-CGCGgAGCC-CGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 42190 0.66 0.582223
Target:  5'- gCAGCGCgGgcggcagaucgugGUGCCgguuaaCGGG-CCCGCCg -3'
miRNA:   3'- -GUUGCGaCa------------CGCGGa-----GCCCgGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 68704 0.66 0.576362
Target:  5'- gGAC-CcGUGCGCCggccgCGcGCCCgGCCg -3'
miRNA:   3'- gUUGcGaCACGCGGa----GCcCGGGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 122107 0.66 0.576362
Target:  5'- gGACGCUcaacacGUGCcacGCUUCGGGCgCgGCg -3'
miRNA:   3'- gUUGCGA------CACG---CGGAGCCCGgGgCGg -5'
6729 3' -62.8 NC_001875.2 + 22918 0.66 0.567597
Target:  5'- cCAGcCGCUGUGUGCCggugaugugcuggagCGGuGCgUgGCCg -3'
miRNA:   3'- -GUU-GCGACACGCGGa--------------GCC-CGgGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 101278 0.66 0.567597
Target:  5'- aGGCGCgugcuauuuuuagcgGUGCGUCagCGGcGaCCCCGCUu -3'
miRNA:   3'- gUUGCGa--------------CACGCGGa-GCC-C-GGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 31919 0.66 0.566625
Target:  5'- -cGCGCUGcaccGCGCg-CGGGC-CCGCUc -3'
miRNA:   3'- guUGCGACa---CGCGgaGCCCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 67702 0.66 0.566625
Target:  5'- gCGACGC-GUGCuGCaaggCGGaGCUCCGCa -3'
miRNA:   3'- -GUUGCGaCACG-CGga--GCC-CGGGGCGg -5'
6729 3' -62.8 NC_001875.2 + 90401 0.66 0.566625
Target:  5'- cCGGCGcCUGUGCGCgCgcaGcGGCCCCuGUUu -3'
miRNA:   3'- -GUUGC-GACACGCG-Gag-C-CCGGGG-CGG- -5'
6729 3' -62.8 NC_001875.2 + 120682 0.66 0.566625
Target:  5'- --cUGCUGUGCGCCaUCGa--CCgGCCg -3'
miRNA:   3'- guuGCGACACGCGG-AGCccgGGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 40606 0.66 0.55693
Target:  5'- aCGGCGCcgUGguggGCGCCaccaCGcGCCUCGCCu -3'
miRNA:   3'- -GUUGCG--ACa---CGCGGa---GCcCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 54331 0.66 0.5444
Target:  5'- gCGACGCguuuUGCGCCagCGGGCagcuuuacucuaucCCCGUg -3'
miRNA:   3'- -GUUGCGac--ACGCGGa-GCCCG--------------GGGCGg -5'
6729 3' -62.8 NC_001875.2 + 55328 0.67 0.537691
Target:  5'- gCGACGgUGaugacGCGCCgcuucggGGGCgCCGCCu -3'
miRNA:   3'- -GUUGCgACa----CGCGGag-----CCCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 45077 0.67 0.531963
Target:  5'- aGGCGCUGaaGCGCCgccuagagugcgaGGGCgagCCGCCa -3'
miRNA:   3'- gUUGCGACa-CGCGGag-----------CCCGg--GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.