miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6729 3' -62.8 NC_001875.2 + 84855 0.68 0.428358
Target:  5'- cCAACGUgGUGCGCUcaUCGcGGCUcaCCGUCu -3'
miRNA:   3'- -GUUGCGaCACGCGG--AGC-CCGG--GGCGG- -5'
6729 3' -62.8 NC_001875.2 + 79118 0.7 0.333271
Target:  5'- aCGGCGUUGUcggcggcggGCGCCgcggCGGGCUCguuUGCCa -3'
miRNA:   3'- -GUUGCGACA---------CGCGGa---GCCCGGG---GCGG- -5'
6729 3' -62.8 NC_001875.2 + 74182 0.69 0.394901
Target:  5'- uUAGCGCggcaaucuUGUGCGCCgCGGuGCUcucguaccgguCCGCCg -3'
miRNA:   3'- -GUUGCG--------ACACGCGGaGCC-CGG-----------GGCGG- -5'
6729 3' -62.8 NC_001875.2 + 72593 0.68 0.444826
Target:  5'- gGGCGCUGcGgGCgCUUGGGCCUCcagguuguuuacgGCCu -3'
miRNA:   3'- gUUGCGACaCgCG-GAGCCCGGGG-------------CGG- -5'
6729 3' -62.8 NC_001875.2 + 72557 0.67 0.499952
Target:  5'- gGGCGCUGcggGCGCgggcgCGGGCgCUGCg -3'
miRNA:   3'- gUUGCGACa--CGCGga---GCCCGgGGCGg -5'
6729 3' -62.8 NC_001875.2 + 70922 0.67 0.481524
Target:  5'- ---aGCgGUGCGUCagCGccGGCCCCGCUu -3'
miRNA:   3'- guugCGaCACGCGGa-GC--CCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 70385 0.74 0.205635
Target:  5'- gCGGCGCUucgggcugugucGgcgGCGCCUCGGGCgCCCaguggucGCCg -3'
miRNA:   3'- -GUUGCGA------------Ca--CGCGGAGCCCG-GGG-------CGG- -5'
6729 3' -62.8 NC_001875.2 + 70204 0.69 0.403106
Target:  5'- aCGGCGaccaCUGgGCGCC-CGaGGCgCCGCCg -3'
miRNA:   3'- -GUUGC----GACaCGCGGaGC-CCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 68704 0.66 0.576362
Target:  5'- gGAC-CcGUGCGCCggccgCGcGCCCgGCCg -3'
miRNA:   3'- gUUGcGaCACGCGGa----GCcCGGGgCGG- -5'
6729 3' -62.8 NC_001875.2 + 67702 0.66 0.566625
Target:  5'- gCGACGC-GUGCuGCaaggCGGaGCUCCGCa -3'
miRNA:   3'- -GUUGCGaCACG-CGga--GCC-CGGGGCGg -5'
6729 3' -62.8 NC_001875.2 + 67594 0.68 0.428358
Target:  5'- aGACGCUGU-UGCU--GGGCUCCGUCa -3'
miRNA:   3'- gUUGCGACAcGCGGagCCCGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 63618 0.7 0.340576
Target:  5'- uGugGCUGgaaaccaaCGCCUCGcGGCUggCCGCCg -3'
miRNA:   3'- gUugCGACac------GCGGAGC-CCGG--GGCGG- -5'
6729 3' -62.8 NC_001875.2 + 62556 0.66 0.595942
Target:  5'- aAACGUUGUGCGgg-UGGacuuGCCgCCGCCa -3'
miRNA:   3'- gUUGCGACACGCggaGCC----CGG-GGCGG- -5'
6729 3' -62.8 NC_001875.2 + 62351 0.67 0.528157
Target:  5'- gGGCGCg--GCGCCaguUUGGGUCgCgCGCCa -3'
miRNA:   3'- gUUGCGacaCGCGG---AGCCCGG-G-GCGG- -5'
6729 3' -62.8 NC_001875.2 + 56625 0.69 0.378818
Target:  5'- uGGCGCUGaccaacacGCGCg-CGGaCCCCGCCa -3'
miRNA:   3'- gUUGCGACa-------CGCGgaGCCcGGGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 55328 0.67 0.537691
Target:  5'- gCGACGgUGaugacGCGCCgcuucggGGGCgCCGCCu -3'
miRNA:   3'- -GUUGCgACa----CGCGGag-----CCCGgGGCGG- -5'
6729 3' -62.8 NC_001875.2 + 54906 0.71 0.29187
Target:  5'- -uGCGCUGgcgGUGCCggCGGuGCgCCCGCa -3'
miRNA:   3'- guUGCGACa--CGCGGa-GCC-CG-GGGCGg -5'
6729 3' -62.8 NC_001875.2 + 54609 0.69 0.403106
Target:  5'- -cACGCUGUGCGgCgcCGcGGCUaacgaCCGCCa -3'
miRNA:   3'- guUGCGACACGCgGa-GC-CCGG-----GGCGG- -5'
6729 3' -62.8 NC_001875.2 + 54331 0.66 0.5444
Target:  5'- gCGACGCguuuUGCGCCagCGGGCagcuuuacucuaucCCCGUg -3'
miRNA:   3'- -GUUGCGac--ACGCGGa-GCCCG--------------GGGCGg -5'
6729 3' -62.8 NC_001875.2 + 52448 0.67 0.517742
Target:  5'- aAAUGgUGUGCGCCgacgaggagcuguUUGGGCuguCCgGCCa -3'
miRNA:   3'- gUUGCgACACGCGG-------------AGCCCG---GGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.