Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6729 | 3' | -62.8 | NC_001875.2 | + | 5924 | 0.67 | 0.528157 |
Target: 5'- uGGCGUUGgguaGCGCCgcgcaggUGGGCgCgGCCu -3' miRNA: 3'- gUUGCGACa---CGCGGa------GCCCGgGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 84855 | 0.68 | 0.428358 |
Target: 5'- cCAACGUgGUGCGCUcaUCGcGGCUcaCCGUCu -3' miRNA: 3'- -GUUGCGaCACGCGG--AGC-CCGG--GGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 72593 | 0.68 | 0.444826 |
Target: 5'- gGGCGCUGcGgGCgCUUGGGCCUCcagguuguuuacgGCCu -3' miRNA: 3'- gUUGCGACaCgCG-GAGCCCGGGG-------------CGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 99342 | 0.68 | 0.445703 |
Target: 5'- aAGCGUcgUGUccGCGCaaCUUGGGCgcgCCCGCCa -3' miRNA: 3'- gUUGCG--ACA--CGCG--GAGCCCG---GGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 70922 | 0.67 | 0.481524 |
Target: 5'- ---aGCgGUGCGUCagCGccGGCCCCGCUu -3' miRNA: 3'- guugCGaCACGCGGa-GC--CCGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 72557 | 0.67 | 0.499952 |
Target: 5'- gGGCGCUGcggGCGCgggcgCGGGCgCUGCg -3' miRNA: 3'- gUUGCGACa--CGCGga---GCCCGgGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 52448 | 0.67 | 0.517742 |
Target: 5'- aAAUGgUGUGCGCCgacgaggagcuguUUGGGCuguCCgGCCa -3' miRNA: 3'- gUUGCgACACGCGG-------------AGCCCG---GGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 39068 | 0.67 | 0.518686 |
Target: 5'- gCAugGCcauUGUGCGCCgCGGcGUCgUGCUg -3' miRNA: 3'- -GUugCG---ACACGCGGaGCC-CGGgGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 85222 | 0.67 | 0.51963 |
Target: 5'- -cGCGCgGUaGCGCCgcaugucgacgagcgCGGGUUCCGCg -3' miRNA: 3'- guUGCGaCA-CGCGGa--------------GCCCGGGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 18297 | 0.68 | 0.428358 |
Target: 5'- --cCGCUucGCGCgCUUauuGGCCCCGCCg -3' miRNA: 3'- guuGCGAcaCGCG-GAGc--CCGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 10393 | 0.68 | 0.428358 |
Target: 5'- gAACGCcGccGCGCCguggCGcGGCaCCCGCUg -3' miRNA: 3'- gUUGCGaCa-CGCGGa---GC-CCG-GGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 128699 | 0.69 | 0.403106 |
Target: 5'- cCGACGCcgcGUccGCGCagCGGGCUUCGCCg -3' miRNA: 3'- -GUUGCGa--CA--CGCGgaGCCCGGGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 110503 | 0.73 | 0.231988 |
Target: 5'- aCGGCGCUGcuCGUCaacaaggCGGGCCCCGCg -3' miRNA: 3'- -GUUGCGACacGCGGa------GCCCGGGGCGg -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 99752 | 0.71 | 0.319007 |
Target: 5'- uGACGCUGUGUGCgUUuGGCgCCGUUg -3' miRNA: 3'- gUUGCGACACGCGgAGcCCGgGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 79118 | 0.7 | 0.333271 |
Target: 5'- aCGGCGUUGUcggcggcggGCGCCgcggCGGGCUCguuUGCCa -3' miRNA: 3'- -GUUGCGACA---------CGCGGa---GCCCGGG---GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 13042 | 0.7 | 0.347996 |
Target: 5'- aAGCGCgcaaauaaGCGCUUUGGGUCgCGCCa -3' miRNA: 3'- gUUGCGaca-----CGCGGAGCCCGGgGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 98037 | 0.7 | 0.347996 |
Target: 5'- -cGCGCcGUGCGCCgaCGGGCaagugCGCCu -3' miRNA: 3'- guUGCGaCACGCGGa-GCCCGgg---GCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 98794 | 0.7 | 0.370943 |
Target: 5'- gAACGCUaucGCGCggCGcGGCgCCCGCCg -3' miRNA: 3'- gUUGCGAca-CGCGgaGC-CCG-GGGCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 12178 | 0.69 | 0.378818 |
Target: 5'- --cCGCUGUGCGCCgccgccgaGGuuuGCCUgGCCg -3' miRNA: 3'- guuGCGACACGCGGag------CC---CGGGgCGG- -5' |
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6729 | 3' | -62.8 | NC_001875.2 | + | 70204 | 0.69 | 0.403106 |
Target: 5'- aCGGCGaccaCUGgGCGCC-CGaGGCgCCGCCg -3' miRNA: 3'- -GUUGC----GACaCGCGGaGC-CCGgGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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