miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6730 5' -56.1 NC_001875.2 + 78482 0.66 0.898802
Target:  5'- cGGUGcGCGUGUUUuUGGcgCACGUCgUGCg -3'
miRNA:   3'- -CCGC-CGUACGAGcACCa-GUGUAG-GCG- -5'
6730 5' -56.1 NC_001875.2 + 95352 0.66 0.892221
Target:  5'- cGGCGGC--GCaCGUGcaCGCGUCgGCg -3'
miRNA:   3'- -CCGCCGuaCGaGCACcaGUGUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 37355 0.66 0.892221
Target:  5'- cGCGGCcgcgcGCUCGUGcGaacgCGCGcgCCGCu -3'
miRNA:   3'- cCGCCGua---CGAGCAC-Ca---GUGUa-GGCG- -5'
6730 5' -56.1 NC_001875.2 + 6657 0.66 0.88541
Target:  5'- cGGCGGCcagcGUGUuggCGcGG-CAC-UCCGCg -3'
miRNA:   3'- -CCGCCG----UACGa--GCaCCaGUGuAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 107995 0.66 0.88541
Target:  5'- gGGCGGCuuuuagcgcGUGCUUGgugggguaccUGGUCuACucgggCCGCu -3'
miRNA:   3'- -CCGCCG---------UACGAGC----------ACCAG-UGua---GGCG- -5'
6730 5' -56.1 NC_001875.2 + 96955 0.66 0.878374
Target:  5'- cGGCgcugGGCAuugUGCgaaCGUGGUCcCAaaaCCGCg -3'
miRNA:   3'- -CCG----CCGU---ACGa--GCACCAGuGUa--GGCG- -5'
6730 5' -56.1 NC_001875.2 + 42223 0.66 0.878374
Target:  5'- uGGuCGGCGacgcGCUCGUG--CACGUgCGCg -3'
miRNA:   3'- -CC-GCCGUa---CGAGCACcaGUGUAgGCG- -5'
6730 5' -56.1 NC_001875.2 + 104971 0.66 0.878374
Target:  5'- cGGCGGCggGCUgGUGcacgGCAUCaGCa -3'
miRNA:   3'- -CCGCCGuaCGAgCACcag-UGUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 39324 0.66 0.878374
Target:  5'- cGGCGGCGUGCgcgCGcugcaGG-CGCAgccugaCGCu -3'
miRNA:   3'- -CCGCCGUACGa--GCa----CCaGUGUag----GCG- -5'
6730 5' -56.1 NC_001875.2 + 91449 0.66 0.871117
Target:  5'- aGCGGCG-GCgCGUGGgcgcgCAUGUCCa- -3'
miRNA:   3'- cCGCCGUaCGaGCACCa----GUGUAGGcg -5'
6730 5' -56.1 NC_001875.2 + 74575 0.66 0.871117
Target:  5'- aGGCGGCGUGCaacugcaUGUcGUC-CGUuuGCa -3'
miRNA:   3'- -CCGCCGUACGa------GCAcCAGuGUAggCG- -5'
6730 5' -56.1 NC_001875.2 + 118186 0.66 0.871117
Target:  5'- cGCGGCGuUGCcgUCGcacUGGUCGCGguaCCGg -3'
miRNA:   3'- cCGCCGU-ACG--AGC---ACCAGUGUa--GGCg -5'
6730 5' -56.1 NC_001875.2 + 118246 0.66 0.871117
Target:  5'- cGCGGCGUcGCgcacaaaGUGGUgGCAgcagucUCCGUu -3'
miRNA:   3'- cCGCCGUA-CGag-----CACCAgUGU------AGGCG- -5'
6730 5' -56.1 NC_001875.2 + 104666 0.67 0.863646
Target:  5'- cGUGGCGUugaGCUCGcccuUGGcCAUGUCgGCa -3'
miRNA:   3'- cCGCCGUA---CGAGC----ACCaGUGUAGgCG- -5'
6730 5' -56.1 NC_001875.2 + 61499 0.67 0.863646
Target:  5'- uGCGcGCcgGCUCG-GcGcCGCAgUCCGCg -3'
miRNA:   3'- cCGC-CGuaCGAGCaC-CaGUGU-AGGCG- -5'
6730 5' -56.1 NC_001875.2 + 240 0.67 0.863646
Target:  5'- cGGCGGCGgaucggGCggcgCGUcauuGGUguCGUUCGCc -3'
miRNA:   3'- -CCGCCGUa-----CGa---GCA----CCAguGUAGGCG- -5'
6730 5' -56.1 NC_001875.2 + 128330 0.67 0.855964
Target:  5'- aGGcCGGCcUuaUCG-GGUCGCGUCCu- -3'
miRNA:   3'- -CC-GCCGuAcgAGCaCCAGUGUAGGcg -5'
6730 5' -56.1 NC_001875.2 + 92015 0.67 0.855964
Target:  5'- uGGCGGCGuuUGCguacuuugCGaagGGcCACG-CCGCg -3'
miRNA:   3'- -CCGCCGU--ACGa-------GCa--CCaGUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 52062 0.67 0.855964
Target:  5'- cGGCGGCAUcacCUCGU--UCACG-CCGUu -3'
miRNA:   3'- -CCGCCGUAc--GAGCAccAGUGUaGGCG- -5'
6730 5' -56.1 NC_001875.2 + 118364 0.67 0.85362
Target:  5'- cGGCGGCccGCUguacgagugcgaccUGUgcaaGGagGCGUCCGCc -3'
miRNA:   3'- -CCGCCGuaCGA--------------GCA----CCagUGUAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.