miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6731 5' -51 NC_001875.2 + 21262 0.66 0.986039
Target:  5'- -aGGCGcgcGCGCGgcGCGGCUaCGAGc- -3'
miRNA:   3'- gaCUGCu--CGUGCaaCGCCGA-GUUUuu -5'
6731 5' -51 NC_001875.2 + 120918 0.66 0.984193
Target:  5'- -cGACGAGCACuucGCGGUUgGAc-- -3'
miRNA:   3'- gaCUGCUCGUGcaaCGCCGAgUUuuu -5'
6731 5' -51 NC_001875.2 + 85242 0.66 0.984193
Target:  5'- -cGACGAGCGCGgguucCGcGCUCGGc-- -3'
miRNA:   3'- gaCUGCUCGUGCaac--GC-CGAGUUuuu -5'
6731 5' -51 NC_001875.2 + 50082 0.66 0.982166
Target:  5'- gCUGAUuAGCGCGc-GCGGCUCcGAc- -3'
miRNA:   3'- -GACUGcUCGUGCaaCGCCGAGuUUuu -5'
6731 5' -51 NC_001875.2 + 92872 0.66 0.982166
Target:  5'- gCUGGCGGGCA----GCGcGCUCAAGu- -3'
miRNA:   3'- -GACUGCUCGUgcaaCGC-CGAGUUUuu -5'
6731 5' -51 NC_001875.2 + 30672 0.66 0.979951
Target:  5'- aCUGACGucguGCACGUgGCGuGCUUu---- -3'
miRNA:   3'- -GACUGCu---CGUGCAaCGC-CGAGuuuuu -5'
6731 5' -51 NC_001875.2 + 64876 0.66 0.979951
Target:  5'- uUGAUGAGCACGUUaaGGUcgUCGAc-- -3'
miRNA:   3'- gACUGCUCGUGCAAcgCCG--AGUUuuu -5'
6731 5' -51 NC_001875.2 + 38304 0.66 0.97901
Target:  5'- gUGGCGAGCGCcgacaaggccgGCGGCaugCAAGAc -3'
miRNA:   3'- gACUGCUCGUGcaa--------CGCCGa--GUUUUu -5'
6731 5' -51 NC_001875.2 + 121544 0.66 0.977537
Target:  5'- -cGAUGGGCACGcagGUGGC-CGAGu- -3'
miRNA:   3'- gaCUGCUCGUGCaa-CGCCGaGUUUuu -5'
6731 5' -51 NC_001875.2 + 79770 0.66 0.977537
Target:  5'- aCUGGac-GCGCGacUGCGGCUCAAc-- -3'
miRNA:   3'- -GACUgcuCGUGCa-ACGCCGAGUUuuu -5'
6731 5' -51 NC_001875.2 + 47624 0.66 0.977537
Target:  5'- -gGACGAGCGCGc-GCGGCc------ -3'
miRNA:   3'- gaCUGCUCGUGCaaCGCCGaguuuuu -5'
6731 5' -51 NC_001875.2 + 6257 0.67 0.974915
Target:  5'- uUGACGAGCAguguuUGUggGCGGCUa----- -3'
miRNA:   3'- gACUGCUCGU-----GCAa-CGCCGAguuuuu -5'
6731 5' -51 NC_001875.2 + 50332 0.67 0.972077
Target:  5'- -aGACGAGCugGUggUGuCGGCgUCGu--- -3'
miRNA:   3'- gaCUGCUCGugCA--AC-GCCG-AGUuuuu -5'
6731 5' -51 NC_001875.2 + 113348 0.67 0.970267
Target:  5'- gCUGGUGGGCACGUcgcagcgcgucacggUGCGGCUg----- -3'
miRNA:   3'- -GACUGCUCGUGCA---------------ACGCCGAguuuuu -5'
6731 5' -51 NC_001875.2 + 9775 0.67 0.96572
Target:  5'- gUGACGuGCACGUgaaGCcGCUgGAGGAg -3'
miRNA:   3'- gACUGCuCGUGCAa--CGcCGAgUUUUU- -5'
6731 5' -51 NC_001875.2 + 90912 0.67 0.962187
Target:  5'- uUGACGGGCACGcagccUGCGGUg------ -3'
miRNA:   3'- gACUGCUCGUGCa----ACGCCGaguuuuu -5'
6731 5' -51 NC_001875.2 + 79964 0.68 0.958409
Target:  5'- aUGcCGGGCACGUUcaaGCGGCcCGAc-- -3'
miRNA:   3'- gACuGCUCGUGCAA---CGCCGaGUUuuu -5'
6731 5' -51 NC_001875.2 + 29007 0.68 0.954379
Target:  5'- cCUG-CGGGCACGUgGUGGCgugcggCAAGu- -3'
miRNA:   3'- -GACuGCUCGUGCAaCGCCGa-----GUUUuu -5'
6731 5' -51 NC_001875.2 + 108239 0.68 0.945548
Target:  5'- -gGACGAGCGCGUcaacgggcUGCuGGC-CAAGc- -3'
miRNA:   3'- gaCUGCUCGUGCA--------ACG-CCGaGUUUuu -5'
6731 5' -51 NC_001875.2 + 110306 0.68 0.940738
Target:  5'- -cGACGAGCGCGacGCGGUgcugCGGu-- -3'
miRNA:   3'- gaCUGCUCGUGCaaCGCCGa---GUUuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.