miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6732 5' -55.7 NC_001875.2 + 130552 0.69 0.762456
Target:  5'- gCGAcCCUGcuuuucggguGCGAACGCucucgaaaggCGCGUGCUACUu -3'
miRNA:   3'- -GCU-GGAC----------UGCUUGUG----------GCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 130465 0.66 0.913322
Target:  5'- gGGCgCUcuCGAACGgCGCGUGCUAUUu -3'
miRNA:   3'- gCUG-GAcuGCUUGUgGCGCGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 129532 0.7 0.713439
Target:  5'- cCGAgCUGGcCGAGCugCGCGCGgCcACg -3'
miRNA:   3'- -GCUgGACU-GCUUGugGCGCGC-GaUGa -5'
6732 5' -55.7 NC_001875.2 + 129189 0.66 0.900987
Target:  5'- aGGUCUGGCGAGCGCgaGCGCGgCgACg -3'
miRNA:   3'- gCUGGACUGCUUGUGg-CGCGC-GaUGa -5'
6732 5' -55.7 NC_001875.2 + 128870 0.66 0.907274
Target:  5'- aGACCUGggcgGCGAAgccCGCUGCGCGg-ACg -3'
miRNA:   3'- gCUGGAC----UGCUU---GUGGCGCGCgaUGa -5'
6732 5' -55.7 NC_001875.2 + 128776 0.66 0.880732
Target:  5'- gCGACCccGGCGcgcCGCUGCGCGCcucuUACg -3'
miRNA:   3'- -GCUGGa-CUGCuu-GUGGCGCGCG----AUGa -5'
6732 5' -55.7 NC_001875.2 + 126324 0.68 0.79054
Target:  5'- gCGGCC-GGCGuaaACUGCGCGCgUGCg -3'
miRNA:   3'- -GCUGGaCUGCuugUGGCGCGCG-AUGa -5'
6732 5' -55.7 NC_001875.2 + 125073 0.82 0.179051
Target:  5'- uCGGCCgagGGCGuGgACCGCGCGCUACa -3'
miRNA:   3'- -GCUGGa--CUGCuUgUGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 122410 0.66 0.913322
Target:  5'- uGGCCUGcgguuaGCGGugGgCGCGUGCaACg -3'
miRNA:   3'- gCUGGAC------UGCUugUgGCGCGCGaUGa -5'
6732 5' -55.7 NC_001875.2 + 120661 0.66 0.900987
Target:  5'- aCGAUUUGGCGAGuguCUGCGCgGUUGCg -3'
miRNA:   3'- -GCUGGACUGCUUgu-GGCGCG-CGAUGa -5'
6732 5' -55.7 NC_001875.2 + 120320 0.67 0.850626
Target:  5'- aCGGCCgcgGGCGAACugcuguuguuGCCGU-UGCUGCUg -3'
miRNA:   3'- -GCUGGa--CUGCUUG----------UGGCGcGCGAUGA- -5'
6732 5' -55.7 NC_001875.2 + 118306 0.7 0.703388
Target:  5'- cCGACaggGuCGAggcgGCcgGCCGCGCGCUGCa -3'
miRNA:   3'- -GCUGga-CuGCU----UG--UGGCGCGCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 117277 0.68 0.825926
Target:  5'- gCGGCCgaugcgcuucACGAugGCCGCGUGCgccaGCUc -3'
miRNA:   3'- -GCUGGac--------UGCUugUGGCGCGCGa---UGA- -5'
6732 5' -55.7 NC_001875.2 + 113733 0.67 0.858469
Target:  5'- cCGugCUGGCccaauggcGCGCCGUGCGCgaccGCg -3'
miRNA:   3'- -GCugGACUGcu------UGUGGCGCGCGa---UGa -5'
6732 5' -55.7 NC_001875.2 + 110662 0.7 0.703388
Target:  5'- gGGCCcgccuuguUGACGAgcaGCGCCGUGUGCUugACg -3'
miRNA:   3'- gCUGG--------ACUGCU---UGUGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 110310 0.69 0.762456
Target:  5'- -cGCCcGACGAGCGCgaCGCGgUGCUGCg -3'
miRNA:   3'- gcUGGaCUGCUUGUG--GCGC-GCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 110171 0.68 0.834348
Target:  5'- gCGcCaCUGGuCGAGCugCGCGCGCg--- -3'
miRNA:   3'- -GCuG-GACU-GCUUGugGCGCGCGauga -5'
6732 5' -55.7 NC_001875.2 + 108833 0.67 0.866105
Target:  5'- gCGGCU--GCGGGCACgGCG-GCUGCg -3'
miRNA:   3'- -GCUGGacUGCUUGUGgCGCgCGAUGa -5'
6732 5' -55.7 NC_001875.2 + 108420 0.69 0.752849
Target:  5'- aCGAgC--GCGGGCACCGCGUGCUugGCc -3'
miRNA:   3'- -GCUgGacUGCUUGUGGCGCGCGA--UGa -5'
6732 5' -55.7 NC_001875.2 + 107484 0.66 0.885642
Target:  5'- aCGACCacGACGGguaucuggagcugaACGCCGCGgcaCGCUugUu -3'
miRNA:   3'- -GCUGGa-CUGCU--------------UGUGGCGC---GCGAugA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.