miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6733 3' -58.1 NC_001875.2 + 124813 0.66 0.815293
Target:  5'- gCGUGGCGGcGCUaaAGGUCaGAUAcGCGCc -3'
miRNA:   3'- -GCGUCGCCuUGG--UCCGG-CUGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 29069 0.66 0.815293
Target:  5'- gGUGGCGGAugACC-GGCUGuGCAagauuugccucGGCGCc -3'
miRNA:   3'- gCGUCGCCU--UGGuCCGGC-UGU-----------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 239 0.66 0.815293
Target:  5'- gGCGGCGG-AUCGGGC-----GGCGCg -3'
miRNA:   3'- gCGUCGCCuUGGUCCGgcuguUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 112048 0.66 0.815293
Target:  5'- aGCGGcCGGcGCgAcGGuCCGGCcGGCGCc -3'
miRNA:   3'- gCGUC-GCCuUGgU-CC-GGCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 100268 0.66 0.815293
Target:  5'- gGCGGCgcgcaaGGAagccGCCGGGCCcaaccuGC-AGCGCg -3'
miRNA:   3'- gCGUCG------CCU----UGGUCCGGc-----UGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 2061 0.66 0.815293
Target:  5'- cCGCAGaCGGugcuCCGGcaaCCGACccGCGCa -3'
miRNA:   3'- -GCGUC-GCCuu--GGUCc--GGCUGuuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 7259 0.66 0.815293
Target:  5'- uGCAGCGGccuGGCgCGGGUCGcCGAcGUGUu -3'
miRNA:   3'- gCGUCGCC---UUG-GUCCGGCuGUU-CGCG- -5'
6733 3' -58.1 NC_001875.2 + 4653 0.66 0.815293
Target:  5'- cCGCAGCGGAgcagacgcaACguGuGCCugaaaGCAuGCGCg -3'
miRNA:   3'- -GCGUCGCCU---------UGguC-CGGc----UGUuCGCG- -5'
6733 3' -58.1 NC_001875.2 + 73763 0.66 0.815293
Target:  5'- gCGCAcGC---GCCAGaccGCCGAC-AGCGCg -3'
miRNA:   3'- -GCGU-CGccuUGGUC---CGGCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 89973 0.66 0.815293
Target:  5'- -aCAG-GGAGCUcauugaaguGGCCGuCAAGCGCc -3'
miRNA:   3'- gcGUCgCCUUGGu--------CCGGCuGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 37566 0.66 0.814429
Target:  5'- aCGCGGCaucgaguGGAugC--GCCGGCGcgAGCGCc -3'
miRNA:   3'- -GCGUCG-------CCUugGucCGGCUGU--UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 36982 0.66 0.810087
Target:  5'- gCGCcuGGCGu-ACguGGCCGAUAucgccgcaaugaugcAGCGCa -3'
miRNA:   3'- -GCG--UCGCcuUGguCCGGCUGU---------------UCGCG- -5'
6733 3' -58.1 NC_001875.2 + 12449 0.66 0.806584
Target:  5'- cCGCGGUGGAcGCCAuucagcGGCagcaGAC-GGUGCu -3'
miRNA:   3'- -GCGUCGCCU-UGGU------CCGg---CUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 76657 0.66 0.806584
Target:  5'- gCGuCAGCGGGAUCAuGGCgGuuaaGgAGGUGCg -3'
miRNA:   3'- -GC-GUCGCCUUGGU-CCGgC----UgUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 79279 0.66 0.806584
Target:  5'- cCGCcGCGGcGCCcgccGCCGACAA-CGCc -3'
miRNA:   3'- -GCGuCGCCuUGGuc--CGGCUGUUcGCG- -5'
6733 3' -58.1 NC_001875.2 + 46475 0.66 0.806584
Target:  5'- aGCGGCGGccacguGAUCAGcacgcgguucauGCUaGACGGGCGCc -3'
miRNA:   3'- gCGUCGCC------UUGGUC------------CGG-CUGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 71606 0.66 0.806584
Target:  5'- gCGUGGCGGAcaucaagcgcgaGCUcGGCCGcuucaaucugccGCcGGCGCa -3'
miRNA:   3'- -GCGUCGCCU------------UGGuCCGGC------------UGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 16763 0.66 0.806584
Target:  5'- gGguGCGucACCGGGuaGuauauaaaGCGAGCGCg -3'
miRNA:   3'- gCguCGCcuUGGUCCggC--------UGUUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 103260 0.66 0.805704
Target:  5'- gGCGGUGGcuUCGGaguucacGCUGACuAGCGCa -3'
miRNA:   3'- gCGUCGCCuuGGUC-------CGGCUGuUCGCG- -5'
6733 3' -58.1 NC_001875.2 + 20135 0.66 0.797718
Target:  5'- uGUuGCGuuGCCuuguucGGgCGACGAGCGCa -3'
miRNA:   3'- gCGuCGCcuUGGu-----CCgGCUGUUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.