miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 3' -51.8 NC_001875.2 + 96757 0.66 0.986681
Target:  5'- cGUACUUgacgccgucgaUGCGGCC--GCAAACCagcaCGGg -3'
miRNA:   3'- -CGUGAA-----------AUGCCGGucCGUUUGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 69255 0.66 0.984947
Target:  5'- cGCGCUg---GGCCGcGGCucGAGCCguggCGGc -3'
miRNA:   3'- -CGUGAaaugCCGGU-CCG--UUUGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 43818 0.66 0.984947
Target:  5'- -gGCUUUGcCGGCUAGcGCAAGCUUg-- -3'
miRNA:   3'- cgUGAAAU-GCCGGUC-CGUUUGGAgcc -5'
6736 3' -51.8 NC_001875.2 + 115683 0.66 0.984947
Target:  5'- uGCACacgUugGG-CAGGCAuuCCagGGg -3'
miRNA:   3'- -CGUGaa-AugCCgGUCCGUuuGGagCC- -5'
6736 3' -51.8 NC_001875.2 + 94677 0.66 0.983047
Target:  5'- aGCGC---GCGGCaCGGGUgcugGAACC-CGGc -3'
miRNA:   3'- -CGUGaaaUGCCG-GUCCG----UUUGGaGCC- -5'
6736 3' -51.8 NC_001875.2 + 4452 0.66 0.983047
Target:  5'- aGCACUU--UGGCCAGGCucugagcGCCguccgCGc -3'
miRNA:   3'- -CGUGAAauGCCGGUCCGuu-----UGGa----GCc -5'
6736 3' -51.8 NC_001875.2 + 111868 0.66 0.983047
Target:  5'- cGCACgucagcaACGGCgAGGC--GCCggcCGGa -3'
miRNA:   3'- -CGUGaaa----UGCCGgUCCGuuUGGa--GCC- -5'
6736 3' -51.8 NC_001875.2 + 7047 0.66 0.983047
Target:  5'- cGCGCUUguCGGCCuGGUu--CCgcugCGGc -3'
miRNA:   3'- -CGUGAAauGCCGGuCCGuuuGGa---GCC- -5'
6736 3' -51.8 NC_001875.2 + 126310 0.66 0.983047
Target:  5'- cGCGCgccucaacgGCGGCCGGcGUAAACUgcgCGc -3'
miRNA:   3'- -CGUGaaa------UGCCGGUC-CGUUUGGa--GCc -5'
6736 3' -51.8 NC_001875.2 + 82488 0.66 0.983047
Target:  5'- cGCGCUUUACGuuUAGgaacacaauguaGCGcuCCUCGGg -3'
miRNA:   3'- -CGUGAAAUGCcgGUC------------CGUuuGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 55723 0.66 0.982848
Target:  5'- cGCGCaaaUACGGCCGagcguggccaugcGGCccuCUUCGGg -3'
miRNA:   3'- -CGUGaa-AUGCCGGU-------------CCGuuuGGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 49854 0.66 0.980971
Target:  5'- uGCGCgc--CGGCC-GGCGcGCCUUGc -3'
miRNA:   3'- -CGUGaaauGCCGGuCCGUuUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 289 0.66 0.980971
Target:  5'- cGCAUgc--UGGCCAGGUccagcACCUCGu -3'
miRNA:   3'- -CGUGaaauGCCGGUCCGuu---UGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 119329 0.66 0.980971
Target:  5'- cGCACU--GCGccCCAGGCGcuuuguaaauaAGCCUCGu -3'
miRNA:   3'- -CGUGAaaUGCc-GGUCCGU-----------UUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 45130 0.66 0.978711
Target:  5'- aGCAgUgu-CGGCCGGGCGgcaaAAUUUCGu -3'
miRNA:   3'- -CGUgAaauGCCGGUCCGU----UUGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 73992 0.66 0.976512
Target:  5'- uGCAaa--GCGGCCcGGCGGACCgguacgagagcaccgCGGc -3'
miRNA:   3'- -CGUgaaaUGCCGGuCCGUUUGGa--------------GCC- -5'
6736 3' -51.8 NC_001875.2 + 55083 0.66 0.976257
Target:  5'- aGCACU---CGGCCAGcGCGu-CCUUGu -3'
miRNA:   3'- -CGUGAaauGCCGGUC-CGUuuGGAGCc -5'
6736 3' -51.8 NC_001875.2 + 97194 0.66 0.976257
Target:  5'- uGCACUUgcccacgGCGGCCuccaugauGCAcaccuuguCCUCGGg -3'
miRNA:   3'- -CGUGAAa------UGCCGGuc------CGUuu------GGAGCC- -5'
6736 3' -51.8 NC_001875.2 + 21575 0.67 0.973603
Target:  5'- cGCGCUccGCGGCCAgccGGCccAGCCguUCGa -3'
miRNA:   3'- -CGUGAaaUGCCGGU---CCGu-UUGG--AGCc -5'
6736 3' -51.8 NC_001875.2 + 29199 0.67 0.973603
Target:  5'- gGCaACUUUggccaguugaugGCGGCCAagcuGGCAAACC-CGc -3'
miRNA:   3'- -CG-UGAAA------------UGCCGGU----CCGUUUGGaGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.