miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6736 5' -55.8 NC_001875.2 + 121215 0.66 0.881134
Target:  5'- gCugGGCGGCacCGGCCGGuuguugucguacacaGGGUGCa- -3'
miRNA:   3'- -GugUCGCCGaaGUCGGCU---------------UUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 118318 0.66 0.87823
Target:  5'- --aGGCGGC--CGGCCGc--GCGCUGc -3'
miRNA:   3'- gugUCGCCGaaGUCGGCuuuCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 65873 0.66 0.87823
Target:  5'- uCGCAaCGGCUugUCGGCCGAcagguauuGGUGCa- -3'
miRNA:   3'- -GUGUcGCCGA--AGUCGGCUu-------UCGCGac -5'
6736 5' -55.8 NC_001875.2 + 50029 0.66 0.87823
Target:  5'- uCGCcgGGCGGCgaggCGGCCGGcccGuCGCUGu -3'
miRNA:   3'- -GUG--UCGCCGaa--GUCGGCUuu-C-GCGAC- -5'
6736 5' -55.8 NC_001875.2 + 49582 0.66 0.87081
Target:  5'- aGCAGCuGCgc--GCCGAcGAGCGCUa -3'
miRNA:   3'- gUGUCGcCGaaguCGGCU-UUCGCGAc -5'
6736 5' -55.8 NC_001875.2 + 84351 0.66 0.87081
Target:  5'- gCGgAGCGGCUgc-GCCGGuAGGUGCg- -3'
miRNA:   3'- -GUgUCGCCGAaguCGGCU-UUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 73818 0.66 0.87081
Target:  5'- gACgAGCGGUUUguGCauugguugcguuCGAgcAAGCGCUGg -3'
miRNA:   3'- gUG-UCGCCGAAguCG------------GCU--UUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 125337 0.66 0.87081
Target:  5'- gACGGCGGC--CAGCgUGuuGGCGCg- -3'
miRNA:   3'- gUGUCGCCGaaGUCG-GCuuUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 46513 0.66 0.863166
Target:  5'- uCGCGGCgGGCg--GGgCGAGAGCGCc- -3'
miRNA:   3'- -GUGUCG-CCGaagUCgGCUUUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 3066 0.66 0.855303
Target:  5'- gCGCAGCGGCgc--GCCGggGuCGCc- -3'
miRNA:   3'- -GUGUCGCCGaaguCGGCuuUcGCGac -5'
6736 5' -55.8 NC_001875.2 + 111879 0.66 0.855303
Target:  5'- aACGGCgaGGCgcCGGCCGGAccguGCGCg- -3'
miRNA:   3'- gUGUCG--CCGaaGUCGGCUUu---CGCGac -5'
6736 5' -55.8 NC_001875.2 + 71442 0.66 0.855303
Target:  5'- gGCGGCGGCaacacguucucUUCGGCCaucguGCGCg- -3'
miRNA:   3'- gUGUCGCCG-----------AAGUCGGcuuu-CGCGac -5'
6736 5' -55.8 NC_001875.2 + 13905 0.66 0.847228
Target:  5'- aCGCGGCGGCgcgCAcGCCGGccuGCaGCUu -3'
miRNA:   3'- -GUGUCGCCGaa-GU-CGGCUuu-CG-CGAc -5'
6736 5' -55.8 NC_001875.2 + 110265 0.66 0.847228
Target:  5'- gCugGGcCGGCU--GGCCGcGGAGCGCg- -3'
miRNA:   3'- -GugUC-GCCGAagUCGGC-UUUCGCGac -5'
6736 5' -55.8 NC_001875.2 + 42585 0.66 0.847228
Target:  5'- gCGCAcGCGcGCgUCAGCUc--GGCGCUGg -3'
miRNA:   3'- -GUGU-CGC-CGaAGUCGGcuuUCGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 121459 0.66 0.844765
Target:  5'- gCGCGGCGGCgUUCaaaguuuucggccaGGCCGuagcccGGCGCa- -3'
miRNA:   3'- -GUGUCGCCG-AAG--------------UCGGCuu----UCGCGac -5'
6736 5' -55.8 NC_001875.2 + 73708 0.67 0.838948
Target:  5'- aACGGUGcGCUgc-GCCGGcaGAGCGCUa -3'
miRNA:   3'- gUGUCGC-CGAaguCGGCU--UUCGCGAc -5'
6736 5' -55.8 NC_001875.2 + 128713 0.67 0.838948
Target:  5'- gCGCAGCgGGCUUC-GCCGcccaggucuGCGCg- -3'
miRNA:   3'- -GUGUCG-CCGAAGuCGGCuuu------CGCGac -5'
6736 5' -55.8 NC_001875.2 + 12159 0.67 0.830471
Target:  5'- -cCAGCGcUUUCGGCUGAAGcCGCUGu -3'
miRNA:   3'- guGUCGCcGAAGUCGGCUUUcGCGAC- -5'
6736 5' -55.8 NC_001875.2 + 18673 0.67 0.830471
Target:  5'- aCGguGCGGCUgcuGGgCGAAacguacaaggcGGCGCUGg -3'
miRNA:   3'- -GUguCGCCGAag-UCgGCUU-----------UCGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.