miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 3' -52.5 NC_001875.2 + 34609 0.66 0.978862
Target:  5'- gGCGCaaacaGGAGCGgccCGAgGAcaagguGUGCAUCAu -3'
miRNA:   3'- -CGCG-----CUUCGCau-GCUgCU------CACGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 32058 0.66 0.978862
Target:  5'- uGCGCGAcGCGUACcgcaaaauGGCGcucGUGCAg-- -3'
miRNA:   3'- -CGCGCUuCGCAUG--------CUGCu--CACGUagu -5'
6737 3' -52.5 NC_001875.2 + 3325 0.66 0.976434
Target:  5'- gGCGCGAuaAGCGg--GACGGGcGCcUCGu -3'
miRNA:   3'- -CGCGCU--UCGCaugCUGCUCaCGuAGU- -5'
6737 3' -52.5 NC_001875.2 + 19355 0.66 0.976434
Target:  5'- uGCGCGGAGCGUugGcCGAc-GUAa-- -3'
miRNA:   3'- -CGCGCUUCGCAugCuGCUcaCGUagu -5'
6737 3' -52.5 NC_001875.2 + 75600 0.66 0.976434
Target:  5'- -gGCGAuGGCGU-CGGCGuugGCGUCGg -3'
miRNA:   3'- cgCGCU-UCGCAuGCUGCucaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 128741 0.66 0.976434
Target:  5'- cGCGCGAGccGCGcccCGGCGcGUGCAc-- -3'
miRNA:   3'- -CGCGCUU--CGCau-GCUGCuCACGUagu -5'
6737 3' -52.5 NC_001875.2 + 80625 0.66 0.976434
Target:  5'- cGCGCGGAacGCGcgcuCGACGGGcgGCGcCAg -3'
miRNA:   3'- -CGCGCUU--CGCau--GCUGCUCa-CGUaGU- -5'
6737 3' -52.5 NC_001875.2 + 26092 0.66 0.976434
Target:  5'- aGUGUGAAGUGgGCGAgGAGcuCAUCGa -3'
miRNA:   3'- -CGCGCUUCGCaUGCUgCUCacGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 74601 0.66 0.973808
Target:  5'- aCGCaGAuGUGgcCGugGAGUGCcUCAa -3'
miRNA:   3'- cGCG-CUuCGCauGCugCUCACGuAGU- -5'
6737 3' -52.5 NC_001875.2 + 68894 0.66 0.973808
Target:  5'- aCGCc--GCGUcCGGCGAGUGUcgaGUCAa -3'
miRNA:   3'- cGCGcuuCGCAuGCUGCUCACG---UAGU- -5'
6737 3' -52.5 NC_001875.2 + 113557 0.66 0.973808
Target:  5'- cGCGCGAAGCGgccuugUGCGACcgc-GUGUCGa -3'
miRNA:   3'- -CGCGCUUCGC------AUGCUGcucaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 109958 0.66 0.970975
Target:  5'- aGCGCGAcGUGUACGACaAGUaCAa-- -3'
miRNA:   3'- -CGCGCUuCGCAUGCUGcUCAcGUagu -5'
6737 3' -52.5 NC_001875.2 + 65719 0.66 0.97068
Target:  5'- uGUGCGAcGCG-ACGACGgccagcuguacacGG-GCAUCAc -3'
miRNA:   3'- -CGCGCUuCGCaUGCUGC-------------UCaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 11138 0.66 0.96793
Target:  5'- uCGCGAAGUGauugcCGACGGGgagGCGUa- -3'
miRNA:   3'- cGCGCUUCGCau---GCUGCUCa--CGUAgu -5'
6737 3' -52.5 NC_001875.2 + 76915 0.66 0.96793
Target:  5'- gGCGCccAGCG-ACGACGAGaGCGg-- -3'
miRNA:   3'- -CGCGcuUCGCaUGCUGCUCaCGUagu -5'
6737 3' -52.5 NC_001875.2 + 14937 0.67 0.964664
Target:  5'- gGUGCGGauGGCGUugG-CGucGUGCAccUCAu -3'
miRNA:   3'- -CGCGCU--UCGCAugCuGCu-CACGU--AGU- -5'
6737 3' -52.5 NC_001875.2 + 47552 0.67 0.961172
Target:  5'- uCGCGAcGCGUaucAUGACGAGcGCAa-- -3'
miRNA:   3'- cGCGCUuCGCA---UGCUGCUCaCGUagu -5'
6737 3' -52.5 NC_001875.2 + 10157 0.67 0.961172
Target:  5'- aGCGCGGcguGGUGgcCGACGAGaccacCGUCAc -3'
miRNA:   3'- -CGCGCU---UCGCauGCUGCUCac---GUAGU- -5'
6737 3' -52.5 NC_001875.2 + 75504 0.67 0.957448
Target:  5'- -gGCGAuGGCGU-CGGCGAugGCGUCGg -3'
miRNA:   3'- cgCGCU-UCGCAuGCUGCUcaCGUAGU- -5'
6737 3' -52.5 NC_001875.2 + 42910 0.67 0.957448
Target:  5'- uGUGCGccgcaugccguGGGCGUcgcagucaaACGugGcGUGCGUCAg -3'
miRNA:   3'- -CGCGC-----------UUCGCA---------UGCugCuCACGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.