miRNA display CGI


Results 1 - 20 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 3' -63.9 NC_001875.2 + 103321 0.66 0.575783
Target:  5'- gGCGuGcCGgGCGacGCGuGCGCGACgGCUa -3'
miRNA:   3'- gCGC-CaGCgCGC--CGC-CGCGUUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 62546 0.66 0.575783
Target:  5'- gCGCGuuggcaaacGUUGUGCgGGUGGacuuGCcGCCGCCa -3'
miRNA:   3'- -GCGC---------CAGCGCG-CCGCCg---CGuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 23801 0.66 0.575783
Target:  5'- cCGaCGuGUCGCuccGCGGCgucgGGCGC-GCCGUg -3'
miRNA:   3'- -GC-GC-CAGCG---CGCCG----CCGCGuUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 69716 0.66 0.575783
Target:  5'- aCGCGcGUCGCGCuaacguuugcacGGaaucgGGCGgCGACCuGCUg -3'
miRNA:   3'- -GCGC-CAGCGCG------------CCg----CCGC-GUUGG-CGG- -5'
6741 3' -63.9 NC_001875.2 + 92745 0.66 0.575783
Target:  5'- -cCGGUgcagcaGCGCGuuGGCGUAuucguaaacGCCGCCa -3'
miRNA:   3'- gcGCCAg-----CGCGCcgCCGCGU---------UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 24065 0.66 0.575783
Target:  5'- gCGUcuGGuUCGUuuuggGCGGCGGCGUugaguuGCgGCCu -3'
miRNA:   3'- -GCG--CC-AGCG-----CGCCGCCGCGu-----UGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 20972 0.66 0.575783
Target:  5'- aCGC-GUCGCaauGCccGCaGCGCAACUGCCc -3'
miRNA:   3'- -GCGcCAGCG---CGc-CGcCGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 127965 0.66 0.575783
Target:  5'- uGCcca-GCuuGGCGGCGCGguGCUGCCg -3'
miRNA:   3'- gCGccagCGcgCCGCCGCGU--UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 20030 0.66 0.575783
Target:  5'- aCGCGGagcagccaggCGcCGuCGGCcGCGUGcACCGCCg -3'
miRNA:   3'- -GCGCCa---------GC-GC-GCCGcCGCGU-UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 65509 0.66 0.575783
Target:  5'- aCGCGG-CGUuucuuaCGGCGGCcGCccaCGCCa -3'
miRNA:   3'- -GCGCCaGCGc-----GCCGCCG-CGuugGCGG- -5'
6741 3' -63.9 NC_001875.2 + 77679 0.66 0.575783
Target:  5'- cCGCuGUCcgaGCGCGuauuuGCGCGACUGCCg -3'
miRNA:   3'- -GCGcCAG---CGCGCcgc--CGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 90443 0.66 0.574824
Target:  5'- aCGCG--CGCGCagaggcgucggugGGCGGCGCGuaauuUCGCUg -3'
miRNA:   3'- -GCGCcaGCGCG-------------CCGCCGCGUu----GGCGG- -5'
6741 3' -63.9 NC_001875.2 + 84718 0.66 0.574824
Target:  5'- gCGCGGUUGaagggguCGCGGuuGCGC--CCGCg -3'
miRNA:   3'- -GCGCCAGC-------GCGCCgcCGCGuuGGCGg -5'
6741 3' -63.9 NC_001875.2 + 54325 0.66 0.570038
Target:  5'- gGCGGUCGUGCGcGUgacggucacgucguuGGaCGCGcCCGgCg -3'
miRNA:   3'- gCGCCAGCGCGC-CG---------------CC-GCGUuGGCgG- -5'
6741 3' -63.9 NC_001875.2 + 50770 0.66 0.566216
Target:  5'- aCGCGGcucuUCuCGUcGCGGCGCAccauuaCGCCg -3'
miRNA:   3'- -GCGCC----AGcGCGcCGCCGCGUug----GCGG- -5'
6741 3' -63.9 NC_001875.2 + 50551 0.66 0.566216
Target:  5'- gGCGG-CGCGCGugucuuuuGCGGgGCAuUCGUUg -3'
miRNA:   3'- gCGCCaGCGCGC--------CGCCgCGUuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 130292 0.66 0.566216
Target:  5'- gGCGGUUGCGUGGUuugcGGCaaaauaGCGGgCGUUg -3'
miRNA:   3'- gCGCCAGCGCGCCG----CCG------CGUUgGCGG- -5'
6741 3' -63.9 NC_001875.2 + 33590 0.66 0.566216
Target:  5'- aGuCGG-CGaCGUGGCGGUugaacacgggcaGCAguccgucgGCCGCCg -3'
miRNA:   3'- gC-GCCaGC-GCGCCGCCG------------CGU--------UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 82515 0.66 0.566216
Target:  5'- aGCGcuccUCGgGCGGCccGUGCAACUGCa -3'
miRNA:   3'- gCGCc---AGCgCGCCGc-CGCGUUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 92258 0.66 0.566216
Target:  5'- aCGCGGacCGUGCuGaGCaGCGCGGCCGg- -3'
miRNA:   3'- -GCGCCa-GCGCG-C-CGcCGCGUUGGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.