miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 5' -55.9 NC_001875.2 + 61604 0.66 0.874525
Target:  5'- -gGCgccgGCGGCGCUucggGCUGUGUCgGCGg -3'
miRNA:   3'- caUGa---CGUUGCGG----CGGCACAGgUGUu -5'
6742 5' -55.9 NC_001875.2 + 61480 0.66 0.874525
Target:  5'- uUGCUGCAGCGCgucgauuaucaCGUCGUuuUCCGCGu -3'
miRNA:   3'- cAUGACGUUGCG-----------GCGGCAc-AGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 58049 0.66 0.874525
Target:  5'- -cGCUGCcguuccaGCCGCCGccgCCACAAc -3'
miRNA:   3'- caUGACGuug----CGGCGGCacaGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 928 0.66 0.874525
Target:  5'- -gACUGCAGgGCCGC---GUCCAUGAu -3'
miRNA:   3'- caUGACGUUgCGGCGgcaCAGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 78478 0.66 0.873781
Target:  5'- gGUuCUG-AACGCCGUCGUcguagucGUCCACGu -3'
miRNA:   3'- -CAuGACgUUGCGGCGGCA-------CAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 48256 0.66 0.866975
Target:  5'- cUACgGCGGCGCCccGCCGggacaccucaugUGUCCGCc- -3'
miRNA:   3'- cAUGaCGUUGCGG--CGGC------------ACAGGUGuu -5'
6742 5' -55.9 NC_001875.2 + 96757 0.66 0.866975
Target:  5'- cGUACU-UGACGCCGUCGaUGcggCCGCAAa -3'
miRNA:   3'- -CAUGAcGUUGCGGCGGC-ACa--GGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 49802 0.66 0.866975
Target:  5'- -cGCU-CAGC-CCGCCGcgaUGUCCACGu -3'
miRNA:   3'- caUGAcGUUGcGGCGGC---ACAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 71540 0.66 0.859202
Target:  5'- -cGCUGCGACGCguCGCCugcaGUGUCgccaACAAg -3'
miRNA:   3'- caUGACGUUGCG--GCGG----CACAGg---UGUU- -5'
6742 5' -55.9 NC_001875.2 + 85224 0.66 0.859202
Target:  5'- -cGCgGUAGCGCCGCa-UGUCgACGAg -3'
miRNA:   3'- caUGaCGUUGCGGCGgcACAGgUGUU- -5'
6742 5' -55.9 NC_001875.2 + 8524 0.66 0.859202
Target:  5'- -cACUGCAACGCguuaaGUuuCGUGUCCAa-- -3'
miRNA:   3'- caUGACGUUGCGg----CG--GCACAGGUguu -5'
6742 5' -55.9 NC_001875.2 + 17326 0.66 0.859202
Target:  5'- -aGCUGCuggcgguuGCGCCGCCGcgcGaCCGCGu -3'
miRNA:   3'- caUGACGu-------UGCGGCGGCa--CaGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 45982 0.66 0.859202
Target:  5'- -cGCUGCGGCGaacuCGCCGUG--CACAAc -3'
miRNA:   3'- caUGACGUUGCg---GCGGCACagGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 92512 0.66 0.856828
Target:  5'- -gGCUGCGccugcagcgcgcgcACGCCGCCGgcacgGUgUGCAGc -3'
miRNA:   3'- caUGACGU--------------UGCGGCGGCa----CAgGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 80083 0.66 0.851214
Target:  5'- --uUUGCAGCGCgC-CCGaaaUGUCCACGAg -3'
miRNA:   3'- cauGACGUUGCG-GcGGC---ACAGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 8936 0.66 0.843015
Target:  5'- -cGCUGCAGCagcgGCCgGCCGUuucGUCCAaCAc -3'
miRNA:   3'- caUGACGUUG----CGG-CGGCA---CAGGU-GUu -5'
6742 5' -55.9 NC_001875.2 + 89381 0.66 0.843015
Target:  5'- uUGCUGCGugGCuCGCCGcagcggCCGCu- -3'
miRNA:   3'- cAUGACGUugCG-GCGGCaca---GGUGuu -5'
6742 5' -55.9 NC_001875.2 + 74105 0.66 0.842185
Target:  5'- -gGCaGCGACGCCGUgcuggcgCGUGUUCGCc- -3'
miRNA:   3'- caUGaCGUUGCGGCG-------GCACAGGUGuu -5'
6742 5' -55.9 NC_001875.2 + 121385 0.66 0.834616
Target:  5'- -cACUGagcGCGCCGCCGcG-CCGCGu -3'
miRNA:   3'- caUGACgu-UGCGGCGGCaCaGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 54104 0.66 0.834616
Target:  5'- -aGCUGCuGCGCCGCCGaauUgCGCGu -3'
miRNA:   3'- caUGACGuUGCGGCGGCac-AgGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.