miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6743 3' -62.9 NC_001875.2 + 109117 0.77 0.124806
Target:  5'- gGCCGGCGCacaaguagGCCACAGUGGCGaCGa- -3'
miRNA:   3'- -CGGCCGUGg-------CGGUGUCACCGCcGCag -5'
6743 3' -62.9 NC_001875.2 + 103966 0.68 0.424065
Target:  5'- -aCGGCAuucgaguCUGCCAUGGaaaugGGCGGCGUg -3'
miRNA:   3'- cgGCCGU-------GGCGGUGUCa----CCGCCGCAg -5'
6743 3' -62.9 NC_001875.2 + 102567 0.66 0.572653
Target:  5'- aCCGcGCcCCGCCggcGCGGUcGGCGGCc-- -3'
miRNA:   3'- cGGC-CGuGGCGG---UGUCA-CCGCCGcag -5'
6743 3' -62.9 NC_001875.2 + 100893 0.68 0.442207
Target:  5'- aGCCGGUccgGgCGCCGCAGcGcGCGgagacGCGUCg -3'
miRNA:   3'- -CGGCCG---UgGCGGUGUCaC-CGC-----CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 100132 0.67 0.524482
Target:  5'- uGCUGGCGCUguuugugucuGCCGCuGUcGCGGUGaUCa -3'
miRNA:   3'- -CGGCCGUGG----------CGGUGuCAcCGCCGC-AG- -5'
6743 3' -62.9 NC_001875.2 + 99373 0.66 0.572653
Target:  5'- cGCCaaguGGCcaaAgCGCCGCAccGGCGGCGcCa -3'
miRNA:   3'- -CGG----CCG---UgGCGGUGUcaCCGCCGCaG- -5'
6743 3' -62.9 NC_001875.2 + 99277 0.78 0.099397
Target:  5'- cGCgCGGCACUGCUGCAGccgcuccucGGCGGCGUUg -3'
miRNA:   3'- -CG-GCCGUGGCGGUGUCa--------CCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 98545 0.66 0.543589
Target:  5'- cGCCaacccGCAgUGCUACuuuGUGGUGuGCGUCa -3'
miRNA:   3'- -CGGc----CGUgGCGGUGu--CACCGC-CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 97871 0.68 0.416428
Target:  5'- uGCCGGUcggcuGCgCGCCGCAcgGGCacguugcgGGCGUCg -3'
miRNA:   3'- -CGGCCG-----UG-GCGGUGUcaCCG--------CCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 96305 0.67 0.515024
Target:  5'- gGCCGGguggGCgGCCAgCAccGUGGCcGCGUCa -3'
miRNA:   3'- -CGGCCg---UGgCGGU-GU--CACCGcCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 95739 0.67 0.504701
Target:  5'- -gCGGCGCCGCCGCcgcGUGcugccgcGCGagcGCGUCu -3'
miRNA:   3'- cgGCCGUGGCGGUGu--CAC-------CGC---CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 94730 0.77 0.124493
Target:  5'- cGCCGGCGCggCGCCGCGcccgcacacccacGcGGCGGUGUCg -3'
miRNA:   3'- -CGGCCGUG--GCGGUGU-------------CaCCGCCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 94232 0.68 0.450999
Target:  5'- cGUCGGCGagcaCGCCGCcGUGcggccggccGCGGCGcUCg -3'
miRNA:   3'- -CGGCCGUg---GCGGUGuCAC---------CGCCGC-AG- -5'
6743 3' -62.9 NC_001875.2 + 93782 0.66 0.572653
Target:  5'- gGgCGGCAgCGCaaaaAGUGGaugauGGCGUCa -3'
miRNA:   3'- -CgGCCGUgGCGgug-UCACCg----CCGCAG- -5'
6743 3' -62.9 NC_001875.2 + 92537 0.66 0.582427
Target:  5'- cGCCGGCACggugugcagCGCgCACuuGGUGuCGGCGg- -3'
miRNA:   3'- -CGGCCGUG---------GCG-GUG--UCACcGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 92458 0.66 0.566807
Target:  5'- uGCacaGGCACgagugGCCGCAGgguaggcacgagacGGCGGgCGUCa -3'
miRNA:   3'- -CGg--CCGUGg----CGGUGUCa-------------CCGCC-GCAG- -5'
6743 3' -62.9 NC_001875.2 + 91867 0.66 0.534005
Target:  5'- gGCCcccagGGCGCCuGCUGguGcGGCGGCGg- -3'
miRNA:   3'- -CGG-----CCGUGG-CGGUguCaCCGCCGCag -5'
6743 3' -62.9 NC_001875.2 + 91732 0.73 0.229606
Target:  5'- cGUCGGCAaguacagCGCCAgcCAGUGGCG-CGUCa -3'
miRNA:   3'- -CGGCCGUg------GCGGU--GUCACCGCcGCAG- -5'
6743 3' -62.9 NC_001875.2 + 91379 0.66 0.552262
Target:  5'- cCCGGCACCaCCACGcccucggggcuGcccacguucucgaUGGCGcGCGUCa -3'
miRNA:   3'- cGGCCGUGGcGGUGU-----------C-------------ACCGC-CGCAG- -5'
6743 3' -62.9 NC_001875.2 + 91204 0.68 0.430924
Target:  5'- gGUCGGguCCGCCucguaguaggcgagGCGcGUGGUGGCGcCc -3'
miRNA:   3'- -CGGCCguGGCGG--------------UGU-CACCGCCGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.