miRNA display CGI


Results 1 - 20 of 502 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6744 5' -55.3 NC_001875.2 + 112822 0.66 0.905563
Target:  5'- ----aCGCCGcgcACG-UGCAAAGCGCGUu -3'
miRNA:   3'- uauccGCGGU---UGCuGCGUUUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 120266 0.66 0.905563
Target:  5'- cGUAGGCGCaCAcCGcucccCGCuucggcGGCGCGUa -3'
miRNA:   3'- -UAUCCGCG-GUuGCu----GCGuu----UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 102757 0.66 0.905563
Target:  5'- uUGGGaacCCGACGACGCGccGUG-GCa -3'
miRNA:   3'- uAUCCgc-GGUUGCUGCGUuuCGCgCG- -5'
6744 5' -55.3 NC_001875.2 + 66105 0.66 0.905563
Target:  5'- -gAGGC-CCGcGCGGCgggcgGCGAGGCgGCGCc -3'
miRNA:   3'- uaUCCGcGGU-UGCUG-----CGUUUCG-CGCG- -5'
6744 5' -55.3 NC_001875.2 + 56450 0.66 0.905563
Target:  5'- --cGGUgagGCCggUGGCGgGGuccGCGCGCg -3'
miRNA:   3'- uauCCG---CGGuuGCUGCgUUu--CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 6953 0.66 0.905563
Target:  5'- --cGuGCGCC-GCGAcauCGCcacGGCGCGCu -3'
miRNA:   3'- uauC-CGCGGuUGCU---GCGuu-UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 22988 0.66 0.905563
Target:  5'- ---aGCGCCGccaagaucuGCG-CGUuuuGGGCGCGCa -3'
miRNA:   3'- uaucCGCGGU---------UGCuGCGu--UUCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 34650 0.66 0.905563
Target:  5'- -gAGGcCGCCGugGGCaaguGCAccuacacgauuGGGCuGCGCg -3'
miRNA:   3'- uaUCC-GCGGUugCUG----CGU-----------UUCG-CGCG- -5'
6744 5' -55.3 NC_001875.2 + 94615 0.66 0.905563
Target:  5'- uGUAGcGCGgCAGCGGCuugcuGCAccGCuGCGCc -3'
miRNA:   3'- -UAUC-CGCgGUUGCUG-----CGUuuCG-CGCG- -5'
6744 5' -55.3 NC_001875.2 + 3822 0.66 0.905563
Target:  5'- --cGGcCGUCGuCGGCGCAcgccGGCGCGg -3'
miRNA:   3'- uauCC-GCGGUuGCUGCGUu---UCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 55322 0.66 0.905563
Target:  5'- --uGGCGC--GCGACGguGAuGaCGCGCc -3'
miRNA:   3'- uauCCGCGguUGCUGCguUU-C-GCGCG- -5'
6744 5' -55.3 NC_001875.2 + 101108 0.66 0.905563
Target:  5'- -gGGGuCGCCGcUGACGCAccGCuaaaaauagcacGCGCc -3'
miRNA:   3'- uaUCC-GCGGUuGCUGCGUuuCG------------CGCG- -5'
6744 5' -55.3 NC_001875.2 + 14936 0.66 0.905563
Target:  5'- --cGGUGCgGAUGGCGUu-GGCGuCGUg -3'
miRNA:   3'- uauCCGCGgUUGCUGCGuuUCGC-GCG- -5'
6744 5' -55.3 NC_001875.2 + 55725 0.66 0.905563
Target:  5'- --uGGCGCUggaaAAgGAgCGCuacGGCGCGCc -3'
miRNA:   3'- uauCCGCGG----UUgCU-GCGuu-UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 122804 0.66 0.904927
Target:  5'- --cGGCgcgGCCGGCGgcuccaaACGCAAGGCGUcCg -3'
miRNA:   3'- uauCCG---CGGUUGC-------UGCGUUUCGCGcG- -5'
6744 5' -55.3 NC_001875.2 + 18041 0.66 0.901709
Target:  5'- -aGGGCGaguuCAACGAgGCGuacugccgccgcuucGGGCGCGa -3'
miRNA:   3'- uaUCCGCg---GUUGCUgCGU---------------UUCGCGCg -5'
6744 5' -55.3 NC_001875.2 + 37327 0.66 0.901709
Target:  5'- -cGGGCuGCCGuacuuuguggacuuuGCG-CGCGGccGCGCGCu -3'
miRNA:   3'- uaUCCG-CGGU---------------UGCuGCGUUu-CGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 126011 0.66 0.901709
Target:  5'- -cGGGCGCguccagauCGGCGGCGCu-GGCagucuacuaccuuauGCGCa -3'
miRNA:   3'- uaUCCGCG--------GUUGCUGCGuuUCG---------------CGCG- -5'
6744 5' -55.3 NC_001875.2 + 16532 0.66 0.89909
Target:  5'- -gAGGuCGCgcgugcaauaCAAUGACGUgcgcGGCGCGCu -3'
miRNA:   3'- uaUCC-GCG----------GUUGCUGCGuu--UCGCGCG- -5'
6744 5' -55.3 NC_001875.2 + 89770 0.66 0.89909
Target:  5'- --uGGUgGUCGGCGACGCGcucgugcacGUGCGCg -3'
miRNA:   3'- uauCCG-CGGUUGCUGCGUuu-------CGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.