Results 21 - 40 of 578 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6745 | 5' | -57.7 | NC_001875.2 | + | 75618 | 0.66 | 0.83644 |
Target: 5'- -gGCGUCgGCGUugGCGuCGGCGuugGCGuCGGCg -3' miRNA: 3'- cgCGCAG-CGCG--CGU-GUCGU---UGU-GCCG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 66809 | 0.66 | 0.83644 |
Target: 5'- uGCGCGUacgccggcaGCGaGUugAGCAcaaACgACGGCu -3' miRNA: 3'- -CGCGCAg--------CGCgCGugUCGU---UG-UGCCG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 127414 | 0.66 | 0.83644 |
Target: 5'- -gGCGgCGCGCGU-CAGCAugccgccguGCAUGaGCa -3' miRNA: 3'- cgCGCaGCGCGCGuGUCGU---------UGUGC-CG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 59575 | 0.66 | 0.83644 |
Target: 5'- aUGUGUUGCGC-UGCAGCGuggccgacguGCGCGaGCa -3' miRNA: 3'- cGCGCAGCGCGcGUGUCGU----------UGUGC-CG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 79915 | 0.66 | 0.83644 |
Target: 5'- -aGCGcCGCaCGCuguGCAGCGgCGGCa -3' miRNA: 3'- cgCGCaGCGcGCGuguCGUUGU-GCCG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 41120 | 0.66 | 0.83644 |
Target: 5'- -gGCGUCGUGUGC-CAGC---GCGuGCc -3' miRNA: 3'- cgCGCAGCGCGCGuGUCGuugUGC-CG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 70204 | 0.66 | 0.835622 |
Target: 5'- gGCGUGUCGCGgGCcacguuagcgauCAGUucucgccaagccagcGCGCGGUg -3' miRNA: 3'- -CGCGCAGCGCgCGu-----------GUCGu--------------UGUGCCG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 58698 | 0.66 | 0.835622 |
Target: 5'- -aGCGUUguggagaGCGUGUACAGCGcgACGcGCa -3' miRNA: 3'- cgCGCAG-------CGCGCGUGUCGUugUGC-CG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 105069 | 0.66 | 0.835622 |
Target: 5'- gGCGCGUCGCucaacgaGUGCuACGGCGAagagUACGa- -3' miRNA: 3'- -CGCGCAGCG-------CGCG-UGUCGUU----GUGCcg -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 122696 | 0.66 | 0.835622 |
Target: 5'- cGUGCGcCGUggacaccgaacugGCGCGCgAGUc-CACGGCg -3' miRNA: 3'- -CGCGCaGCG-------------CGCGUG-UCGuuGUGCCG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 33561 | 0.66 | 0.831503 |
Target: 5'- aGUGCgGUCGcCGCGgGgcaccaugcccgaguCGGCGACGUGGCg -3' miRNA: 3'- -CGCG-CAGC-GCGCgU---------------GUCGUUGUGCCG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 14932 | 0.66 | 0.828177 |
Target: 5'- uGCGCcaccCGcCGCGCGCGGCuAGCGCa-- -3' miRNA: 3'- -CGCGca--GC-GCGCGUGUCG-UUGUGccg -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 39023 | 0.66 | 0.828177 |
Target: 5'- -aGU-UUGCGCGCACcuCGGCAuCGGCg -3' miRNA: 3'- cgCGcAGCGCGCGUGucGUUGU-GCCG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 22665 | 0.66 | 0.828177 |
Target: 5'- cGCGCGuUCGC-UGCACAaacucaaaacGCAucauGCAuCGGCu -3' miRNA: 3'- -CGCGC-AGCGcGCGUGU----------CGU----UGU-GCCG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 51956 | 0.66 | 0.828177 |
Target: 5'- gGCGCGaCGUGcCGCAC-GC-GCGCGcGUg -3' miRNA: 3'- -CGCGCaGCGC-GCGUGuCGuUGUGC-CG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 42306 | 0.66 | 0.828177 |
Target: 5'- gGCGCcaaGUacagaucgaGCGCGCcCAGCGGCcccaGGCg -3' miRNA: 3'- -CGCG---CAg--------CGCGCGuGUCGUUGug--CCG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 77044 | 0.66 | 0.828177 |
Target: 5'- cCGCGUCGCgGUGCuAguGCcGCcCGGUu -3' miRNA: 3'- cGCGCAGCG-CGCG-UguCGuUGuGCCG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 36198 | 0.66 | 0.828177 |
Target: 5'- uUGuCGUCGUccaCGCAaauUAGCAGCACGuGCg -3' miRNA: 3'- cGC-GCAGCGc--GCGU---GUCGUUGUGC-CG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 9898 | 0.66 | 0.828177 |
Target: 5'- aCGCuGcCGCGCGCACcacaaagauguGGCcGCaAUGGCu -3' miRNA: 3'- cGCG-CaGCGCGCGUG-----------UCGuUG-UGCCG- -5' |
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6745 | 5' | -57.7 | NC_001875.2 | + | 115751 | 0.66 | 0.828177 |
Target: 5'- cGCGCGUUGCaGCGCAUucaaacCGcCGCGaGCc -3' miRNA: 3'- -CGCGCAGCG-CGCGUGuc----GUuGUGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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