miRNA display CGI


Results 21 - 40 of 578 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6745 5' -57.7 NC_001875.2 + 124894 0.69 0.667691
Target:  5'- gGCGaUGUCGCgGCGCAC-GCAcgACGCGuuGCu -3'
miRNA:   3'- -CGC-GCAGCG-CGCGUGuCGU--UGUGC--CG- -5'
6745 5' -57.7 NC_001875.2 + 124814 0.67 0.765866
Target:  5'- cGCGCGgccaccUCGCuuaCGUcCAGCAACugGcGCg -3'
miRNA:   3'- -CGCGC------AGCGc--GCGuGUCGUUGugC-CG- -5'
6745 5' -57.7 NC_001875.2 + 124777 0.72 0.473441
Target:  5'- cCGUGUUguugaGCGCGCGgauuaugucuugcacCAGCGugGCGGCg -3'
miRNA:   3'- cGCGCAG-----CGCGCGU---------------GUCGUugUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 124728 0.71 0.52697
Target:  5'- gGCGCGUgGCG-GUcaauguCGGCAGCGCGcGCu -3'
miRNA:   3'- -CGCGCAgCGCgCGu-----GUCGUUGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 124691 0.69 0.667691
Target:  5'- uUGgGUCGCGCugGCACgugcggugaAGCAACA-GGCa -3'
miRNA:   3'- cGCgCAGCGCG--CGUG---------UCGUUGUgCCG- -5'
6745 5' -57.7 NC_001875.2 + 124456 0.69 0.647436
Target:  5'- cCGCGUCGCGCaaccGCGUGGCcGAUcCGGCg -3'
miRNA:   3'- cGCGCAGCGCG----CGUGUCG-UUGuGCCG- -5'
6745 5' -57.7 NC_001875.2 + 124203 0.71 0.556572
Target:  5'- aGCGCGUCgGCGUGUguGC-GCAGguCGGUg -3'
miRNA:   3'- -CGCGCAG-CGCGCG--UGuCGUUguGCCG- -5'
6745 5' -57.7 NC_001875.2 + 123329 0.79 0.199285
Target:  5'- aCGCGUUGCaGUGCGCGGCGcccACACGGa -3'
miRNA:   3'- cGCGCAGCG-CGCGUGUCGU---UGUGCCg -5'
6745 5' -57.7 NC_001875.2 + 122696 0.66 0.835622
Target:  5'- cGUGCGcCGUggacaccgaacugGCGCGCgAGUc-CACGGCg -3'
miRNA:   3'- -CGCGCaGCG-------------CGCGUG-UCGuuGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 122540 0.73 0.448621
Target:  5'- uUGCGUCcgGCGCGCAguGCAcauguauaucggggACGCGcGCg -3'
miRNA:   3'- cGCGCAG--CGCGCGUguCGU--------------UGUGC-CG- -5'
6745 5' -57.7 NC_001875.2 + 122470 0.66 0.811131
Target:  5'- gGCuGCG--GCGCGCGCAGCAccuuuGCGauGCc -3'
miRNA:   3'- -CG-CGCagCGCGCGUGUCGU-----UGUgcCG- -5'
6745 5' -57.7 NC_001875.2 + 122133 0.7 0.627134
Target:  5'- gGCGCGgCGCG-GC-CGGCGcgcACgACGGCg -3'
miRNA:   3'- -CGCGCaGCGCgCGuGUCGU---UG-UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 122073 0.67 0.793446
Target:  5'- aUGUGcCGCGUGCGCuuGGCcucggaACGGCg -3'
miRNA:   3'- cGCGCaGCGCGCGUG--UCGuug---UGCCG- -5'
6745 5' -57.7 NC_001875.2 + 121934 0.71 0.566549
Target:  5'- uGCGgccacaucuuUGUgGUGCGCGCGGCAGCGuuGCa -3'
miRNA:   3'- -CGC----------GCAgCGCGCGUGUCGUUGUgcCG- -5'
6745 5' -57.7 NC_001875.2 + 121893 0.66 0.828177
Target:  5'- aCGCuGUCGuCGaCGCGCAGau-CGgGGCa -3'
miRNA:   3'- cGCG-CAGC-GC-GCGUGUCguuGUgCCG- -5'
6745 5' -57.7 NC_001875.2 + 121441 0.73 0.424538
Target:  5'- aGCGgGUgcCGCGC-CACGGCGcgGCGGCg -3'
miRNA:   3'- -CGCgCA--GCGCGcGUGUCGUugUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 120952 0.72 0.460483
Target:  5'- uGCGCcaacacGUUGCGCG-GCAGCGccaccgACGCGGCc -3'
miRNA:   3'- -CGCG------CAGCGCGCgUGUCGU------UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 120808 0.66 0.83644
Target:  5'- aGCGCaaaCG-GCGCAgCAGCAACGacgagGGCu -3'
miRNA:   3'- -CGCGca-GCgCGCGU-GUCGUUGUg----CCG- -5'
6745 5' -57.7 NC_001875.2 + 120649 0.68 0.697838
Target:  5'- cGCgGCGUCGUgcuccacaacgGCGCGCAacuugucgauGCGcGCGCGGUa -3'
miRNA:   3'- -CG-CGCAGCG-----------CGCGUGU----------CGU-UGUGCCG- -5'
6745 5' -57.7 NC_001875.2 + 120405 0.68 0.686828
Target:  5'- -aGCGUUuauaaagGCuggaaGUGCGCAGUcGCACGGCg -3'
miRNA:   3'- cgCGCAG-------CG-----CGCGUGUCGuUGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.