miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6750 3' -51 NC_001875.2 + 11932 0.66 0.990528
Target:  5'- uGCGCgCG-GC--GCGC-CGA-CUGUGCg -3'
miRNA:   3'- -CGCG-GCaCGuuUGCGaGUUaGACACG- -5'
6750 3' -51 NC_001875.2 + 73091 0.66 0.990528
Target:  5'- aCGCgCGaGCAGuACGCUUgcgGGUCUGUGa -3'
miRNA:   3'- cGCG-GCaCGUU-UGCGAG---UUAGACACg -5'
6750 3' -51 NC_001875.2 + 62416 0.66 0.990528
Target:  5'- uGCGUgG-GCAAGCGUUUGcgCUGcGCc -3'
miRNA:   3'- -CGCGgCaCGUUUGCGAGUuaGACaCG- -5'
6750 3' -51 NC_001875.2 + 29280 0.66 0.990528
Target:  5'- cGCGCCG-GCGGG-GCgCGGUCgUGUGg -3'
miRNA:   3'- -CGCGGCaCGUUUgCGaGUUAG-ACACg -5'
6750 3' -51 NC_001875.2 + 92518 0.66 0.989175
Target:  5'- gGCGCuCGUGCGcgcccGGCGCguuuUCUcUGCa -3'
miRNA:   3'- -CGCG-GCACGU-----UUGCGaguuAGAcACG- -5'
6750 3' -51 NC_001875.2 + 62710 0.66 0.989175
Target:  5'- uCGCCacguUGCAAACGCUgCug-CgUGUGCa -3'
miRNA:   3'- cGCGGc---ACGUUUGCGA-GuuaG-ACACG- -5'
6750 3' -51 NC_001875.2 + 99714 0.66 0.989175
Target:  5'- aGCGCUaUGC-GGCGCUCGcaa-GUGCg -3'
miRNA:   3'- -CGCGGcACGuUUGCGAGUuagaCACG- -5'
6750 3' -51 NC_001875.2 + 47764 0.66 0.989175
Target:  5'- cUGCCGcuUGguAACGCaccCGA-CUGUGCa -3'
miRNA:   3'- cGCGGC--ACguUUGCGa--GUUaGACACG- -5'
6750 3' -51 NC_001875.2 + 98971 0.66 0.987676
Target:  5'- aGCGCUGcaGCGAACGCUacuUUUG-GCc -3'
miRNA:   3'- -CGCGGCa-CGUUUGCGAguuAGACaCG- -5'
6750 3' -51 NC_001875.2 + 1714 0.66 0.987676
Target:  5'- cUGCUuuucggGUGCGAACGCUCucgaacggCgUGUGCu -3'
miRNA:   3'- cGCGG------CACGUUUGCGAGuua-----G-ACACG- -5'
6750 3' -51 NC_001875.2 + 6944 0.66 0.987676
Target:  5'- cGCGUCGUGCGuGCGCcgCGAcaUCgccacgGCg -3'
miRNA:   3'- -CGCGGCACGUuUGCGa-GUU--AGaca---CG- -5'
6750 3' -51 NC_001875.2 + 37121 0.66 0.987676
Target:  5'- gGCGCCGcGCcGGCGUUUGcGUCUuuccgcGUGCg -3'
miRNA:   3'- -CGCGGCaCGuUUGCGAGU-UAGA------CACG- -5'
6750 3' -51 NC_001875.2 + 52107 0.66 0.987676
Target:  5'- aGCGCCGaa-GAGCGCgaCAuUCUGcGCa -3'
miRNA:   3'- -CGCGGCacgUUUGCGa-GUuAGACaCG- -5'
6750 3' -51 NC_001875.2 + 67473 0.66 0.986021
Target:  5'- cGCGCCG-GCAcagGAUGCUCucgCaGUuGCg -3'
miRNA:   3'- -CGCGGCaCGU---UUGCGAGuuaGaCA-CG- -5'
6750 3' -51 NC_001875.2 + 131483 0.66 0.986021
Target:  5'- cGCGCggccaaCGUGCAGAuCGa-CAGUCUGcgGCg -3'
miRNA:   3'- -CGCG------GCACGUUU-GCgaGUUAGACa-CG- -5'
6750 3' -51 NC_001875.2 + 102255 0.66 0.986021
Target:  5'- -aGCCGcggGUGAGCGCUCGcgCgcguUGCa -3'
miRNA:   3'- cgCGGCa--CGUUUGCGAGUuaGac--ACG- -5'
6750 3' -51 NC_001875.2 + 95318 0.66 0.984201
Target:  5'- aGCGCCGUuugGCGAAacaUCAAUUUGUcGUa -3'
miRNA:   3'- -CGCGGCA---CGUUUgcgAGUUAGACA-CG- -5'
6750 3' -51 NC_001875.2 + 36659 0.66 0.984201
Target:  5'- cGCGUCGUGC--GCGCUgAGcUCgggGCg -3'
miRNA:   3'- -CGCGGCACGuuUGCGAgUU-AGacaCG- -5'
6750 3' -51 NC_001875.2 + 57950 0.66 0.984201
Target:  5'- aCGCCaUGCcGGCGCU-AAUC-GUGCa -3'
miRNA:   3'- cGCGGcACGuUUGCGAgUUAGaCACG- -5'
6750 3' -51 NC_001875.2 + 46934 0.66 0.984201
Target:  5'- aGCcCCGUGCu-GCGCUacgcCAAggUUGUGCu -3'
miRNA:   3'- -CGcGGCACGuuUGCGA----GUUa-GACACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.