miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6754 5' -61.3 NC_001875.2 + 26216 0.66 0.598632
Target:  5'- uACUCGGCGACcaGgGCCGcguaccggggcaUGGCGGCGu -3'
miRNA:   3'- uUGGGCUGCUG--CgCGGC------------ACCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 81290 0.66 0.598632
Target:  5'- -cCCCGcaaaagacACG-CGCGCCGccGGCGGCGc -3'
miRNA:   3'- uuGGGC--------UGCuGCGCGGCa-CCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 12090 0.66 0.58854
Target:  5'- cGCaCCGGCGGCGaGCUuUGGCGGUAc -3'
miRNA:   3'- uUG-GGCUGCUGCgCGGcACCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 68577 0.66 0.58854
Target:  5'- cGCaCCG-CGugGCGCCGcUGGCcGCc- -3'
miRNA:   3'- uUG-GGCuGCugCGCGGC-ACCGuCGuu -5'
6754 5' -61.3 NC_001875.2 + 10374 0.66 0.587533
Target:  5'- cGGCCUGGCcgaaaacuuuGAacgccgcCGCGCCGUGGCgcGGCAc -3'
miRNA:   3'- -UUGGGCUG----------CU-------GCGCGGCACCG--UCGUu -5'
6754 5' -61.3 NC_001875.2 + 48050 0.66 0.578479
Target:  5'- aGGCaCGAgGGCGCGCgcuacaacgaGUGGCAGCGu -3'
miRNA:   3'- -UUGgGCUgCUGCGCGg---------CACCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 38286 0.66 0.578479
Target:  5'- cGCgCGuACGACGaCGCgGUGGCgAGCGc -3'
miRNA:   3'- uUGgGC-UGCUGC-GCGgCACCG-UCGUu -5'
6754 5' -61.3 NC_001875.2 + 13903 0.66 0.568455
Target:  5'- aAACgCGGCGGCGCGCaCGccGGCcuGCAGc -3'
miRNA:   3'- -UUGgGCUGCUGCGCG-GCa-CCGu-CGUU- -5'
6754 5' -61.3 NC_001875.2 + 12668 0.67 0.557481
Target:  5'- --gUUGACG-CGCGCCGcguuggccgggugUGGCGGCAAa -3'
miRNA:   3'- uugGGCUGCuGCGCGGC-------------ACCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 105896 0.67 0.548546
Target:  5'- uACCCGAUGGCGgG-CGcGGCGGCc- -3'
miRNA:   3'- uUGGGCUGCUGCgCgGCaCCGUCGuu -5'
6754 5' -61.3 NC_001875.2 + 55129 0.67 0.548546
Target:  5'- --aCCGACGcucaGCGCGaCCGacGGCGGCAc -3'
miRNA:   3'- uugGGCUGC----UGCGC-GGCa-CCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 129586 0.67 0.548546
Target:  5'- uGGCCCGcaGCGACaGCcaguuGCUGcGGCAGCAAc -3'
miRNA:   3'- -UUGGGC--UGCUG-CG-----CGGCaCCGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 65754 0.67 0.548546
Target:  5'- gGGCCuCGGCGuauuCGUGCgCGgcgGGCGGCGg -3'
miRNA:   3'- -UUGG-GCUGCu---GCGCG-GCa--CCGUCGUu -5'
6754 5' -61.3 NC_001875.2 + 20905 0.67 0.545578
Target:  5'- cAGCCCgucgcauuguucguGugGGCGCGCCaUGGcCAGCu- -3'
miRNA:   3'- -UUGGG--------------CugCUGCGCGGcACC-GUCGuu -5'
6754 5' -61.3 NC_001875.2 + 12966 0.67 0.538673
Target:  5'- -uCgCGGCGGgcgugggcucCGCGCCGUGGUGGCu- -3'
miRNA:   3'- uuGgGCUGCU----------GCGCGGCACCGUCGuu -5'
6754 5' -61.3 NC_001875.2 + 125477 0.67 0.538673
Target:  5'- uGCCCGACGACGaCaUCGUGGCcgAGUu- -3'
miRNA:   3'- uUGGGCUGCUGC-GcGGCACCG--UCGuu -5'
6754 5' -61.3 NC_001875.2 + 49347 0.67 0.538673
Target:  5'- cAGCgUgGGCGGCGgGCCGUGGU-GCAAc -3'
miRNA:   3'- -UUG-GgCUGCUGCgCGGCACCGuCGUU- -5'
6754 5' -61.3 NC_001875.2 + 21686 0.67 0.537689
Target:  5'- cGCCCGACGagcGCGaCGCgGUGcugcgguccagccGCAGCAGg -3'
miRNA:   3'- uUGGGCUGC---UGC-GCGgCAC-------------CGUCGUU- -5'
6754 5' -61.3 NC_001875.2 + 52713 0.67 0.535723
Target:  5'- gAGCCCGccGCGGCGCccgccgccgacaacGCCGUGGCcaAGUu- -3'
miRNA:   3'- -UUGGGC--UGCUGCG--------------CGGCACCG--UCGuu -5'
6754 5' -61.3 NC_001875.2 + 45100 0.67 0.532778
Target:  5'- uGCCCGACGuGCGCGCCuucaugugcgacGagcagugucggccgGGCGGCAAa -3'
miRNA:   3'- uUGGGCUGC-UGCGCGG------------Ca-------------CCGUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.