miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 3' -59.5 NC_001875.2 + 84357 0.66 0.694196
Target:  5'- -cGGCuGCGCCGguAGGu-GCGCGGcCu -3'
miRNA:   3'- aaCCG-CGCGGCguUCUucCGCGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 18276 0.66 0.694196
Target:  5'- aUGGCGCGCCGUgcgcGAccGCGCcguuGAUu -3'
miRNA:   3'- aACCGCGCGGCGuu--CUucCGCGu---CUG- -5'
6755 3' -59.5 NC_001875.2 + 74120 0.66 0.691142
Target:  5'- cUGGCGCGUguuCGCcuagagcuggaguucGAGGGCGCGG-Cg -3'
miRNA:   3'- aACCGCGCG---GCGuu-------------CUUCCGCGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 29768 0.66 0.684001
Target:  5'- -gGGCGUcgccauguacgGCCGCGGGuggacGGGCGUgucAGGCu -3'
miRNA:   3'- aaCCGCG-----------CGGCGUUCu----UCCGCG---UCUG- -5'
6755 3' -59.5 NC_001875.2 + 130821 0.66 0.684001
Target:  5'- -gGGCcccgccacGCGCUGCAAGAacGGGCccGCAG-Ca -3'
miRNA:   3'- aaCCG--------CGCGGCGUUCU--UCCG--CGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 34915 0.66 0.684001
Target:  5'- -aGGCGCGCCaGUuuuuuGGGUGCGG-Cg -3'
miRNA:   3'- aaCCGCGCGG-CGuucu-UCCGCGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 6973 0.66 0.684001
Target:  5'- -cGGCGCGCUGCuuGAca--GCGGGCa -3'
miRNA:   3'- aaCCGCGCGGCGuuCUuccgCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 94478 0.66 0.684001
Target:  5'- -cGGCGCGCgcguuCGCAcGAGcGCGCGGcCg -3'
miRNA:   3'- aaCCGCGCG-----GCGUuCUUcCGCGUCuG- -5'
6755 3' -59.5 NC_001875.2 + 89388 0.66 0.682979
Target:  5'- gUGGCuCGCCGCAGc--GGCcgcugacGCAGGCg -3'
miRNA:   3'- aACCGcGCGGCGUUcuuCCG-------CGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 66305 0.66 0.673762
Target:  5'- --uGCGCgGCCgGCGAGuugauGGCGUGGGCg -3'
miRNA:   3'- aacCGCG-CGG-CGUUCuu---CCGCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 100879 0.66 0.663489
Target:  5'- -aGGCGCaGCgCGCGcGuGGGCGCcauGGCg -3'
miRNA:   3'- aaCCGCG-CG-GCGUuCuUCCGCGu--CUG- -5'
6755 3' -59.5 NC_001875.2 + 95568 0.66 0.663489
Target:  5'- aUUGGCGCuCCGUuguGcAGGCGUugcaAGACg -3'
miRNA:   3'- -AACCGCGcGGCGuu-CuUCCGCG----UCUG- -5'
6755 3' -59.5 NC_001875.2 + 117095 0.66 0.663489
Target:  5'- -aGGaaaCGCGUCGCAAacccaacAGGGCGCGGAa -3'
miRNA:   3'- aaCC---GCGCGGCGUUc------UUCCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 79291 0.66 0.663489
Target:  5'- gUGGCGCGCgugcgCGCAuacuGGCGCGuGCu -3'
miRNA:   3'- aACCGCGCG-----GCGUucuuCCGCGUcUG- -5'
6755 3' -59.5 NC_001875.2 + 113615 0.66 0.663489
Target:  5'- -cGGCGgGCCGCGgcggcaAGAGcGGCGaCGG-Cg -3'
miRNA:   3'- aaCCGCgCGGCGU------UCUU-CCGC-GUCuG- -5'
6755 3' -59.5 NC_001875.2 + 104132 0.66 0.663489
Target:  5'- --uGCGCGCCGUggGGcccauucccguGGCGaUAGACg -3'
miRNA:   3'- aacCGCGCGGCGuuCUu----------CCGC-GUCUG- -5'
6755 3' -59.5 NC_001875.2 + 126012 0.66 0.663489
Target:  5'- -gGGCGCGUC-CAGaucGgcGGCGCuGGCa -3'
miRNA:   3'- aaCCGCGCGGcGUU---CuuCCGCGuCUG- -5'
6755 3' -59.5 NC_001875.2 + 3867 0.66 0.65319
Target:  5'- gUGGCacggcagcaccGCGCCGcCAAGcuGG-GCAGGCu -3'
miRNA:   3'- aACCG-----------CGCGGC-GUUCuuCCgCGUCUG- -5'
6755 3' -59.5 NC_001875.2 + 74377 0.66 0.65319
Target:  5'- -cGGcCGCGgCGCGuucAGGCGCGGGu -3'
miRNA:   3'- aaCC-GCGCgGCGUucuUCCGCGUCUg -5'
6755 3' -59.5 NC_001875.2 + 37415 0.66 0.65319
Target:  5'- -cGGCGCGUgG-AAGAGgccguGGCGCAGuCg -3'
miRNA:   3'- aaCCGCGCGgCgUUCUU-----CCGCGUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.