miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6755 5' -56.9 NC_001875.2 + 69086 0.66 0.842194
Target:  5'- ---cCUGCGCGUUcaaCGGCGCGggccACACg -3'
miRNA:   3'- uuucGGCGCGCAGa--GCCGUGCa---UGUG- -5'
6755 5' -56.9 NC_001875.2 + 20038 0.66 0.842194
Target:  5'- -cAGCCagGCGCcg-UCGGcCGCGUGCACc -3'
miRNA:   3'- uuUCGG--CGCGcagAGCC-GUGCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 90993 0.66 0.842194
Target:  5'- --cGgUGCGCGUCUUGGCGa--GCGCc -3'
miRNA:   3'- uuuCgGCGCGCAGAGCCGUgcaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 116176 0.66 0.842194
Target:  5'- --cGCCGUGUGUCgaaugugUGGCguGCGUcuGCACc -3'
miRNA:   3'- uuuCGGCGCGCAGa------GCCG--UGCA--UGUG- -5'
6755 5' -56.9 NC_001875.2 + 131767 0.66 0.833878
Target:  5'- cGGGCgGCGCGUCaUUGGUGuCGUuCGCc -3'
miRNA:   3'- uUUCGgCGCGCAG-AGCCGU-GCAuGUG- -5'
6755 5' -56.9 NC_001875.2 + 113122 0.66 0.833878
Target:  5'- -uGGgCGCGCuGUUguugugCGGCACGUuaauguGCACg -3'
miRNA:   3'- uuUCgGCGCG-CAGa-----GCCGUGCA------UGUG- -5'
6755 5' -56.9 NC_001875.2 + 61085 0.66 0.833878
Target:  5'- --cGCCGCccGCGUCUUG-CAUGUugAUg -3'
miRNA:   3'- uuuCGGCG--CGCAGAGCcGUGCAugUG- -5'
6755 5' -56.9 NC_001875.2 + 84352 0.66 0.833878
Target:  5'- cGGAGCgGCuGCG-C-CGGUAgGUGCGCg -3'
miRNA:   3'- -UUUCGgCG-CGCaGaGCCGUgCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 93794 0.66 0.828797
Target:  5'- cAAGUCGCGCGggcgUUCGuuugcaauauuuggaGCACGaGCACg -3'
miRNA:   3'- uUUCGGCGCGCa---GAGC---------------CGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 42295 0.66 0.828797
Target:  5'- cAGGCUGCGCGUgcguaUagacgaucccgccuaUCGGCGCG-ACGCc -3'
miRNA:   3'- uUUCGGCGCGCA-----G---------------AGCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 80862 0.66 0.825373
Target:  5'- cAAGCUGaGCGaCUCGGCGCGcGC-Ca -3'
miRNA:   3'- uUUCGGCgCGCaGAGCCGUGCaUGuG- -5'
6755 5' -56.9 NC_001875.2 + 57523 0.66 0.825373
Target:  5'- --cGcCCGUGCuGUC-CGGCGCcUGCGCg -3'
miRNA:   3'- uuuC-GGCGCG-CAGaGCCGUGcAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 124692 0.66 0.825373
Target:  5'- uGGGUCGCGC----UGGCACGUGCGg -3'
miRNA:   3'- uUUCGGCGCGcagaGCCGUGCAUGUg -5'
6755 5' -56.9 NC_001875.2 + 114670 0.66 0.825373
Target:  5'- -uGGCgGUGCGUCagCGGCGacCGUGCu- -3'
miRNA:   3'- uuUCGgCGCGCAGa-GCCGU--GCAUGug -5'
6755 5' -56.9 NC_001875.2 + 49928 0.66 0.825373
Target:  5'- cGGAGCCGCGCGcgcuaaUCaGCugGUcgucggagcuGCGCg -3'
miRNA:   3'- -UUUCGGCGCGCag----AGcCGugCA----------UGUG- -5'
6755 5' -56.9 NC_001875.2 + 91443 0.66 0.825373
Target:  5'- -uAGCUGaGCGg--CGGCGCGUGgGCg -3'
miRNA:   3'- uuUCGGCgCGCagaGCCGUGCAUgUG- -5'
6755 5' -56.9 NC_001875.2 + 273 0.66 0.825373
Target:  5'- --uGCCGCGCGUUgUCGuugaacucCACGUugACg -3'
miRNA:   3'- uuuCGGCGCGCAG-AGCc-------GUGCAugUG- -5'
6755 5' -56.9 NC_001875.2 + 68728 0.66 0.822786
Target:  5'- -cGGCCGCuaucccauggacgaGCGguugCUCGacacGCugGUGCACa -3'
miRNA:   3'- uuUCGGCG--------------CGCa---GAGC----CGugCAUGUG- -5'
6755 5' -56.9 NC_001875.2 + 37883 0.66 0.816688
Target:  5'- cGGGCCGCGCcagcggCUugcUGGCGCG-GCACu -3'
miRNA:   3'- uUUCGGCGCGca----GA---GCCGUGCaUGUG- -5'
6755 5' -56.9 NC_001875.2 + 32801 0.66 0.816688
Target:  5'- --cGCCGCGcCGgcaagCUCGGCGaacgGCGCc -3'
miRNA:   3'- uuuCGGCGC-GCa----GAGCCGUgca-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.