miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6756 3' -47.4 NC_001875.2 + 33306 0.66 0.999659
Target:  5'- -----cACUG-CGgguuggCGaGCGCGUGGCg -3'
miRNA:   3'- uuuuuuUGACuGCa-----GCaCGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 103328 0.66 0.999659
Target:  5'- ---cGGGC-GACG-CGUGCGCGacGGCu -3'
miRNA:   3'- uuuuUUUGaCUGCaGCACGUGCa-CCG- -5'
6756 3' -47.4 NC_001875.2 + 122070 0.66 0.999659
Target:  5'- --cGGAugUGcCG-CGUGCGCuUGGCc -3'
miRNA:   3'- uuuUUUugACuGCaGCACGUGcACCG- -5'
6756 3' -47.4 NC_001875.2 + 29299 0.66 0.999659
Target:  5'- ----cGugUGGCGugUCGUGCGCGUuguuGCg -3'
miRNA:   3'- uuuuuUugACUGC--AGCACGUGCAc---CG- -5'
6756 3' -47.4 NC_001875.2 + 62561 0.66 0.999568
Target:  5'- ---cGAACgUGuCGUCgGUGUGCGUGuGCa -3'
miRNA:   3'- uuuuUUUG-ACuGCAG-CACGUGCAC-CG- -5'
6756 3' -47.4 NC_001875.2 + 126544 0.66 0.999568
Target:  5'- ---uGGAgUGGuCGUCGgGCGCG-GGCa -3'
miRNA:   3'- uuuuUUUgACU-GCAGCaCGUGCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 774 0.66 0.999568
Target:  5'- ----cAGCUGACGgCG-GCGCGcggaacguucaUGGCg -3'
miRNA:   3'- uuuuuUUGACUGCaGCaCGUGC-----------ACCG- -5'
6756 3' -47.4 NC_001875.2 + 37901 0.66 0.999568
Target:  5'- -----uGCUGGCG-CG-GCAC-UGGCa -3'
miRNA:   3'- uuuuuuUGACUGCaGCaCGUGcACCG- -5'
6756 3' -47.4 NC_001875.2 + 107502 0.66 0.999568
Target:  5'- --uGGAGCUGaACGcCGcgGCACGcuuguUGGCg -3'
miRNA:   3'- uuuUUUUGAC-UGCaGCa-CGUGC-----ACCG- -5'
6756 3' -47.4 NC_001875.2 + 57541 0.66 0.999568
Target:  5'- --uAGAGCa-GCGguugCG-GCACGUGGCg -3'
miRNA:   3'- uuuUUUUGacUGCa---GCaCGUGCACCG- -5'
6756 3' -47.4 NC_001875.2 + 12611 0.66 0.999457
Target:  5'- ----cAACUGAUGUUG-GCGCcaggGGCg -3'
miRNA:   3'- uuuuuUUGACUGCAGCaCGUGca--CCG- -5'
6756 3' -47.4 NC_001875.2 + 40427 0.66 0.999457
Target:  5'- cGAGGGGCUGACG-CGcGCcaucgagaACGUGGg -3'
miRNA:   3'- uUUUUUUGACUGCaGCaCG--------UGCACCg -5'
6756 3' -47.4 NC_001875.2 + 93645 0.66 0.999457
Target:  5'- ------cCUGcACGUCGUGCugG-GGa -3'
miRNA:   3'- uuuuuuuGAC-UGCAGCACGugCaCCg -5'
6756 3' -47.4 NC_001875.2 + 737 0.66 0.99938
Target:  5'- --cAAAGCUGGgGuggucagacauuaaaUCGUGCACGUugauuucgucGGCg -3'
miRNA:   3'- uuuUUUUGACUgC---------------AGCACGUGCA----------CCG- -5'
6756 3' -47.4 NC_001875.2 + 78415 0.66 0.99916
Target:  5'- -----cGCUGGCcgUGUGCGCGcugGGCa -3'
miRNA:   3'- uuuuuuUGACUGcaGCACGUGCa--CCG- -5'
6756 3' -47.4 NC_001875.2 + 71912 0.66 0.99916
Target:  5'- -----cACUGGg--CGUGCGCGUcGGCg -3'
miRNA:   3'- uuuuuuUGACUgcaGCACGUGCA-CCG- -5'
6756 3' -47.4 NC_001875.2 + 50157 0.66 0.99916
Target:  5'- -----uGCUGAgGUCGUagauccGCACGUGcGUc -3'
miRNA:   3'- uuuuuuUGACUgCAGCA------CGUGCAC-CG- -5'
6756 3' -47.4 NC_001875.2 + 41600 0.66 0.99916
Target:  5'- -cGAAGGCgcgGGCG-CGgGCGCG-GGCa -3'
miRNA:   3'- uuUUUUUGa--CUGCaGCaCGUGCaCCG- -5'
6756 3' -47.4 NC_001875.2 + 100189 0.66 0.99916
Target:  5'- uGAAAAGCgcgcCGUUGUGCGacaacuugcuCGUGGCc -3'
miRNA:   3'- uUUUUUUGacu-GCAGCACGU----------GCACCG- -5'
6756 3' -47.4 NC_001875.2 + 79291 0.67 0.998964
Target:  5'- -------gUGGCGcgCGUGCGCGcauacUGGCg -3'
miRNA:   3'- uuuuuuugACUGCa-GCACGUGC-----ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.