miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6757 5' -58.9 NC_001875.2 + 114345 0.66 0.725441
Target:  5'- --uAGCAaacgacgcGGCGUCCGCcaacUUGCuGGCCa -3'
miRNA:   3'- aauUCGU--------UCGCGGGCGc---GACGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 58753 0.66 0.725441
Target:  5'- ---cGCAAGCguacuGCUCGCGCgu--GGCCa -3'
miRNA:   3'- aauuCGUUCG-----CGGGCGCGacguCCGG- -5'
6757 5' -58.9 NC_001875.2 + 84349 0.66 0.725441
Target:  5'- --uGGCgGAGCGgCUGCGCcgGUAGGUg -3'
miRNA:   3'- aauUCG-UUCGCgGGCGCGa-CGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 4523 0.66 0.725441
Target:  5'- -aAAGC-GGCGCaCCGCcgGCUGCGGuuCCu -3'
miRNA:   3'- aaUUCGuUCGCG-GGCG--CGACGUCc-GG- -5'
6757 5' -58.9 NC_001875.2 + 98276 0.66 0.725441
Target:  5'- -cGGGCAuGGUGCCC-CGCgGCGaccgcacuguGGCCa -3'
miRNA:   3'- aaUUCGU-UCGCGGGcGCGaCGU----------CCGG- -5'
6757 5' -58.9 NC_001875.2 + 34139 0.66 0.725441
Target:  5'- -gAAGCAAuacgauuCGCCUGCGCgaaUGguGGCg -3'
miRNA:   3'- aaUUCGUUc------GCGGGCGCG---ACguCCGg -5'
6757 5' -58.9 NC_001875.2 + 96849 0.66 0.725441
Target:  5'- --cGGCGAGCGUCauggGCGCcacuucuaGCGGGCg -3'
miRNA:   3'- aauUCGUUCGCGGg---CGCGa-------CGUCCGg -5'
6757 5' -58.9 NC_001875.2 + 102086 0.66 0.724441
Target:  5'- -cGAGCAcaguaacAGCGUCaGUGUcgGCAGGCUg -3'
miRNA:   3'- aaUUCGU-------UCGCGGgCGCGa-CGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 30298 0.66 0.715404
Target:  5'- ---cGCAAcGCGUCCGUggccGCgUGCAGGUUa -3'
miRNA:   3'- aauuCGUU-CGCGGGCG----CG-ACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 90031 0.66 0.715404
Target:  5'- --uGGCcgcGGCGCCgGCGC-GCGuGCCg -3'
miRNA:   3'- aauUCGu--UCGCGGgCGCGaCGUcCGG- -5'
6757 5' -58.9 NC_001875.2 + 102993 0.66 0.715404
Target:  5'- --cGGCGacaAGUGCCCGcCGUccgUGUcGGCCa -3'
miRNA:   3'- aauUCGU---UCGCGGGC-GCG---ACGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 23577 0.66 0.715404
Target:  5'- -cGAGCGcGgGCaCCGCG-UGCuuGGCCa -3'
miRNA:   3'- aaUUCGUuCgCG-GGCGCgACGu-CCGG- -5'
6757 5' -58.9 NC_001875.2 + 92172 0.66 0.715404
Target:  5'- --cAGCucGcCGCCgCGCGCcGCcGGCCc -3'
miRNA:   3'- aauUCGuuC-GCGG-GCGCGaCGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 81160 0.66 0.715404
Target:  5'- -aAAGCAGGCGCCuuuCGgGCcGaC-GGCCa -3'
miRNA:   3'- aaUUCGUUCGCGG---GCgCGaC-GuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 82861 0.66 0.715404
Target:  5'- cUUGGGCAguucGGCGCCCGaCuCUGCGuGCa -3'
miRNA:   3'- -AAUUCGU----UCGCGGGC-GcGACGUcCGg -5'
6757 5' -58.9 NC_001875.2 + 54184 0.66 0.712379
Target:  5'- --cGGCGcuGCGUUgGCGUccaccagacacacgUGCAGGCCg -3'
miRNA:   3'- aauUCGUu-CGCGGgCGCG--------------ACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 125031 0.66 0.705295
Target:  5'- --cGGCGcagcugguucAGCGaCCCGauCUGCGGGUCg -3'
miRNA:   3'- aauUCGU----------UCGC-GGGCgcGACGUCCGG- -5'
6757 5' -58.9 NC_001875.2 + 8853 0.66 0.705295
Target:  5'- --cAGCuGGCGCaCGUGUUGCcGGUCa -3'
miRNA:   3'- aauUCGuUCGCGgGCGCGACGuCCGG- -5'
6757 5' -58.9 NC_001875.2 + 5847 0.66 0.705295
Target:  5'- -------cGCGCCCGCGUaGCAGuGCa -3'
miRNA:   3'- aauucguuCGCGGGCGCGaCGUC-CGg -5'
6757 5' -58.9 NC_001875.2 + 46930 0.66 0.705295
Target:  5'- ---cGCcAGC-CCCGUGCUGCGcuacGCCa -3'
miRNA:   3'- aauuCGuUCGcGGGCGCGACGUc---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.