miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6758 3' -68.8 NC_001875.2 + 31716 0.65 0.361649
Target:  5'- cCGGCGCauuacuuUCGGCGAaguugGCCCGCGgCguuugagCGCg -3'
miRNA:   3'- uGCCGCG-------GGCCGCU-----CGGGCGCgG-------GCG- -5'
6758 3' -68.8 NC_001875.2 + 106464 0.66 0.357246
Target:  5'- uCGGCGCCgGGCcaacguuGAcggcuuugaaaaacaGCUCGCcgguguaGCCCGCg -3'
miRNA:   3'- uGCCGCGGgCCG-------CU---------------CGGGCG-------CGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 40847 0.66 0.355787
Target:  5'- gACGGCGCUCGcCaAGa-CGCGCaCCGCg -3'
miRNA:   3'- -UGCCGCGGGCcGcUCggGCGCG-GGCG- -5'
6758 3' -68.8 NC_001875.2 + 60212 0.66 0.355787
Target:  5'- cCGGCGgCagauugaagCGGcCGAGCUCGCGCuuGa -3'
miRNA:   3'- uGCCGCgG---------GCC-GCUCGGGCGCGggCg -5'
6758 3' -68.8 NC_001875.2 + 22954 0.66 0.355787
Target:  5'- gGCGGCGCCauGUacGCCUcCGCCgCGCu -3'
miRNA:   3'- -UGCCGCGGgcCGcuCGGGcGCGG-GCG- -5'
6758 3' -68.8 NC_001875.2 + 100950 0.66 0.355787
Target:  5'- aACGG-GCCCGuuuauGCcucuuaAGCaaGCGCCCGCg -3'
miRNA:   3'- -UGCCgCGGGC-----CGc-----UCGggCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 20767 0.66 0.355059
Target:  5'- cACGGCG-CCGGCGucguccacguagaAGCCgucgaCGCGCagugCGCg -3'
miRNA:   3'- -UGCCGCgGGCCGC-------------UCGG-----GCGCGg---GCG- -5'
6758 3' -68.8 NC_001875.2 + 33669 0.66 0.351435
Target:  5'- gGCGGCgugguaaaacaaacgGCCCGaCGuGCgC-CGCCCGCu -3'
miRNA:   3'- -UGCCG---------------CGGGCcGCuCGgGcGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 41132 0.66 0.348555
Target:  5'- --cGCGCuugaCCGGCG-G-CCGCGCCgGCa -3'
miRNA:   3'- ugcCGCG----GGCCGCuCgGGCGCGGgCG- -5'
6758 3' -68.8 NC_001875.2 + 92498 0.66 0.348555
Target:  5'- -gGGCGUCa-GCGucAGgCUGCGCCUGCa -3'
miRNA:   3'- ugCCGCGGgcCGC--UCgGGCGCGGGCG- -5'
6758 3' -68.8 NC_001875.2 + 89768 0.66 0.348555
Target:  5'- aAUGGUGgUCGGCGAcgcGCUCGUGCacgugCGCg -3'
miRNA:   3'- -UGCCGCgGGCCGCU---CGGGCGCGg----GCG- -5'
6758 3' -68.8 NC_001875.2 + 125337 0.66 0.348555
Target:  5'- gACGGCGgCCaGCGuGUUgGCGCggcacuCCGCg -3'
miRNA:   3'- -UGCCGCgGGcCGCuCGGgCGCG------GGCG- -5'
6758 3' -68.8 NC_001875.2 + 91189 0.66 0.348555
Target:  5'- cGCcGCGCaacagCCGGCGcGUgCGCGCCCa- -3'
miRNA:   3'- -UGcCGCG-----GGCCGCuCGgGCGCGGGcg -5'
6758 3' -68.8 NC_001875.2 + 125967 0.66 0.348555
Target:  5'- uCGGCGCaUCGGCGAgggcaaacgcguGCUgGUGCaCUGCu -3'
miRNA:   3'- uGCCGCG-GGCCGCU------------CGGgCGCG-GGCG- -5'
6758 3' -68.8 NC_001875.2 + 3831 0.66 0.348555
Target:  5'- uCGGCGCacgCCGGCGcGgCCGCaGCCUcCa -3'
miRNA:   3'- uGCCGCG---GGCCGCuCgGGCG-CGGGcG- -5'
6758 3' -68.8 NC_001875.2 + 125879 0.66 0.346405
Target:  5'- uCGGCGaCCacauucacguguacuGCGAGgCCGCGCCCa- -3'
miRNA:   3'- uGCCGC-GGgc-------------CGCUCgGGCGCGGGcg -5'
6758 3' -68.8 NC_001875.2 + 128303 0.66 0.341427
Target:  5'- cACGGCG-CCGGUGA-CgUGCGCCaaauGCg -3'
miRNA:   3'- -UGCCGCgGGCCGCUcGgGCGCGGg---CG- -5'
6758 3' -68.8 NC_001875.2 + 98790 0.66 0.341427
Target:  5'- cGCGGaacgcuauCGCgCGGCGcggcGCCCGCcGCgCUGCg -3'
miRNA:   3'- -UGCC--------GCGgGCCGCu---CGGGCG-CG-GGCG- -5'
6758 3' -68.8 NC_001875.2 + 98280 0.66 0.341427
Target:  5'- cAUGGUGCCCcgcGGCGAccgcacugugGCCaacgCGUGCuuGCa -3'
miRNA:   3'- -UGCCGCGGG---CCGCU----------CGG----GCGCGggCG- -5'
6758 3' -68.8 NC_001875.2 + 18275 0.66 0.341427
Target:  5'- aAUGGCGCgCCGuGCGcGaCCGCGCCg-- -3'
miRNA:   3'- -UGCCGCG-GGC-CGCuCgGGCGCGGgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.