miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6761 3' -48.4 NC_001875.2 + 112020 0.66 0.999033
Target:  5'- aCAacgACUCCGAGGUGCGCAucacuuucaacaAGgGCg -3'
miRNA:   3'- gGUcuaUGAGGUUUCGCGUGU------------UCaCG- -5'
6761 3' -48.4 NC_001875.2 + 121159 0.66 0.998816
Target:  5'- uCCAGccguUGCggcagcgCCu--GCGC-CAAGUGCa -3'
miRNA:   3'- -GGUCu---AUGa------GGuuuCGCGuGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 92596 0.66 0.998816
Target:  5'- gCAGuuuCUCCAGcaugcGCGCGCGAaUGCc -3'
miRNA:   3'- gGUCuauGAGGUUu----CGCGUGUUcACG- -5'
6761 3' -48.4 NC_001875.2 + 45966 0.66 0.998816
Target:  5'- aCCAGGUGCggcgguaccCCAGcgugacGGaCGCGCAccacaacaacgcGGUGCa -3'
miRNA:   3'- -GGUCUAUGa--------GGUU------UC-GCGUGU------------UCACG- -5'
6761 3' -48.4 NC_001875.2 + 47525 0.66 0.998559
Target:  5'- uCCGGGUACcgcaggcgCCGcuacuAGGCGCGCAucugGCa -3'
miRNA:   3'- -GGUCUAUGa-------GGU-----UUCGCGUGUuca-CG- -5'
6761 3' -48.4 NC_001875.2 + 5533 0.66 0.998559
Target:  5'- gCCGGccGCcgUUGAGGCGCGCGuuaaGGUGCc -3'
miRNA:   3'- -GGUCuaUGa-GGUUUCGCGUGU----UCACG- -5'
6761 3' -48.4 NC_001875.2 + 74875 0.66 0.998559
Target:  5'- gCGGAUuuGCagCUAAaacacggggcGGUGUACGAGUGCg -3'
miRNA:   3'- gGUCUA--UGa-GGUU----------UCGCGUGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 109109 0.66 0.998559
Target:  5'- --cGGUGCguggCC--GGCGCACAAGUagGCc -3'
miRNA:   3'- gguCUAUGa---GGuuUCGCGUGUUCA--CG- -5'
6761 3' -48.4 NC_001875.2 + 78297 0.66 0.998256
Target:  5'- cCCGuuuGcgGCUCgCGcugguAGCGCACGAcGUGCg -3'
miRNA:   3'- -GGU---CuaUGAG-GUu----UCGCGUGUU-CACG- -5'
6761 3' -48.4 NC_001875.2 + 88341 0.66 0.998256
Target:  5'- cCUGGAggGCgUCAAGGUGUGCAGcGUGCa -3'
miRNA:   3'- -GGUCUa-UGaGGUUUCGCGUGUU-CACG- -5'
6761 3' -48.4 NC_001875.2 + 120644 0.66 0.998256
Target:  5'- uCCGGcgcggcgucGUGCUCCAcaacGGCGCGCAAcuUGUc -3'
miRNA:   3'- -GGUC---------UAUGAGGUu---UCGCGUGUUc-ACG- -5'
6761 3' -48.4 NC_001875.2 + 64264 0.66 0.998256
Target:  5'- aCGG--GCUCaucauCAAGGUGCACAuaauGUGCg -3'
miRNA:   3'- gGUCuaUGAG-----GUUUCGCGUGUu---CACG- -5'
6761 3' -48.4 NC_001875.2 + 6202 0.66 0.998256
Target:  5'- gCCG----UUUCAAAGCGCGCAAuUGCg -3'
miRNA:   3'- -GGUcuauGAGGUUUCGCGUGUUcACG- -5'
6761 3' -48.4 NC_001875.2 + 77550 0.66 0.998049
Target:  5'- cCCAGcUACUUCGAGGUGUACGucaccaaguuuacguGGgaccgGCg -3'
miRNA:   3'- -GGUCuAUGAGGUUUCGCGUGU---------------UCa----CG- -5'
6761 3' -48.4 NC_001875.2 + 78240 0.66 0.997901
Target:  5'- gUCAGAUugUgCu-GGUGCACGGGgucGCu -3'
miRNA:   3'- -GGUCUAugAgGuuUCGCGUGUUCa--CG- -5'
6761 3' -48.4 NC_001875.2 + 110803 0.66 0.997901
Target:  5'- aCGGAUACaacgCCGcgcagguGGaCGCGCuGGUGCg -3'
miRNA:   3'- gGUCUAUGa---GGUu------UC-GCGUGuUCACG- -5'
6761 3' -48.4 NC_001875.2 + 72555 0.66 0.997901
Target:  5'- aCGGGcGCUgCGggcgcgggcgcGGGCGCuGCGGGUGCg -3'
miRNA:   3'- gGUCUaUGAgGU-----------UUCGCG-UGUUCACG- -5'
6761 3' -48.4 NC_001875.2 + 36705 0.67 0.99766
Target:  5'- uCCAGAUcgccggccguggcgcGCUCCAcaacgguuAGGCGCuCGAG-GUg -3'
miRNA:   3'- -GGUCUA---------------UGAGGU--------UUCGCGuGUUCaCG- -5'
6761 3' -48.4 NC_001875.2 + 45164 0.67 0.997487
Target:  5'- gCCAGGUACgucUCCAGcaccGCGUugAGGUcGUc -3'
miRNA:   3'- -GGUCUAUG---AGGUUu---CGCGugUUCA-CG- -5'
6761 3' -48.4 NC_001875.2 + 1035 0.67 0.997487
Target:  5'- gCGGG-GC-CCGAGGCGCACAGcGUuggGCg -3'
miRNA:   3'- gGUCUaUGaGGUUUCGCGUGUU-CA---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.