miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6761 5' -55 NC_001875.2 + 72724 0.66 0.905647
Target:  5'- uUGCGCUUGCGCgucgGCCAGcgAcgccGUCa -3'
miRNA:   3'- cGCGUGAACGCGacg-CGGUCuaU----CAG- -5'
6761 5' -55 NC_001875.2 + 111191 0.66 0.905647
Target:  5'- gGCGCGCUgggcgGCGC-GCGCCGuuUuuuGUUg -3'
miRNA:   3'- -CGCGUGAa----CGCGaCGCGGUcuAu--CAG- -5'
6761 5' -55 NC_001875.2 + 12673 0.66 0.905647
Target:  5'- cGCGCGCc-GCGUUG-GCCGGGUGu-- -3'
miRNA:   3'- -CGCGUGaaCGCGACgCGGUCUAUcag -5'
6761 5' -55 NC_001875.2 + 3063 0.66 0.905647
Target:  5'- gGCGCGCa-GCgGC-GCGCCGG--GGUCg -3'
miRNA:   3'- -CGCGUGaaCG-CGaCGCGGUCuaUCAG- -5'
6761 5' -55 NC_001875.2 + 114022 0.66 0.905647
Target:  5'- cGCGCAUggcggccGCGCgGU-CCAGAUGGUa -3'
miRNA:   3'- -CGCGUGaa-----CGCGaCGcGGUCUAUCAg -5'
6761 5' -55 NC_001875.2 + 121747 0.66 0.905647
Target:  5'- uUGCACUUGUGCUGUaGaCCAcGUcGUCg -3'
miRNA:   3'- cGCGUGAACGCGACG-C-GGUcUAuCAG- -5'
6761 5' -55 NC_001875.2 + 121400 0.66 0.905009
Target:  5'- cGCGcCGCgucaaaGCuGCUGCGCCaaauguuGGGUAGUg -3'
miRNA:   3'- -CGC-GUGaa----CG-CGACGCGG-------UCUAUCAg -5'
6761 5' -55 NC_001875.2 + 96371 0.66 0.89915
Target:  5'- gGCGCACaUGCGCUGCagguCCuGcgcGUCa -3'
miRNA:   3'- -CGCGUGaACGCGACGc---GGuCuauCAG- -5'
6761 5' -55 NC_001875.2 + 62880 0.66 0.89915
Target:  5'- uGUGCAaaUGCGUgGCGCCGGAa---- -3'
miRNA:   3'- -CGCGUgaACGCGaCGCGGUCUaucag -5'
6761 5' -55 NC_001875.2 + 110072 0.66 0.89915
Target:  5'- cGCGCGCagaGaCGCUGCGCguGGaGGcCg -3'
miRNA:   3'- -CGCGUGaa-C-GCGACGCGguCUaUCaG- -5'
6761 5' -55 NC_001875.2 + 98035 0.66 0.89915
Target:  5'- cGCGCGCcgUGCGCcgacgggcaagUGCGCCuAGAc---- -3'
miRNA:   3'- -CGCGUGa-ACGCG-----------ACGCGG-UCUaucag -5'
6761 5' -55 NC_001875.2 + 16890 0.66 0.892407
Target:  5'- uGCGUACgcGCaGCgGCGCCGcGAU-GUCg -3'
miRNA:   3'- -CGCGUGaaCG-CGaCGCGGU-CUAuCAG- -5'
6761 5' -55 NC_001875.2 + 65555 0.66 0.892407
Target:  5'- cGCGCAUUUGaCGCagagcgcGUGCCAGAagagcuuGUCc -3'
miRNA:   3'- -CGCGUGAAC-GCGa------CGCGGUCUau-----CAG- -5'
6761 5' -55 NC_001875.2 + 44456 0.66 0.892407
Target:  5'- gGCGC-CgucgGCGCagUGCGCCA---AGUCg -3'
miRNA:   3'- -CGCGuGaa--CGCG--ACGCGGUcuaUCAG- -5'
6761 5' -55 NC_001875.2 + 37112 0.66 0.885422
Target:  5'- uGCGgGCgcgGCGCcGCGCCGGcguuUGcGUCu -3'
miRNA:   3'- -CGCgUGaa-CGCGaCGCGGUCu---AU-CAG- -5'
6761 5' -55 NC_001875.2 + 65801 0.66 0.885422
Target:  5'- gGCGCGCggugccUGCGCgGCGCCAa------ -3'
miRNA:   3'- -CGCGUGa-----ACGCGaCGCGGUcuaucag -5'
6761 5' -55 NC_001875.2 + 96605 0.66 0.885422
Target:  5'- cGCGCGCUuuuUGUGCacaaucGCGgCCAGGUcGGUUu -3'
miRNA:   3'- -CGCGUGA---ACGCGa-----CGC-GGUCUA-UCAG- -5'
6761 5' -55 NC_001875.2 + 91143 0.66 0.885422
Target:  5'- cGCGCGCgcgGCGguuccaaaUGCGCCGcgucAUGGUCc -3'
miRNA:   3'- -CGCGUGaa-CGCg-------ACGCGGUc---UAUCAG- -5'
6761 5' -55 NC_001875.2 + 7244 0.66 0.878201
Target:  5'- aUGCACUUuccGCGCUGCagcgGCCuGGcgcgGGUCg -3'
miRNA:   3'- cGCGUGAA---CGCGACG----CGGuCUa---UCAG- -5'
6761 5' -55 NC_001875.2 + 63698 0.66 0.878201
Target:  5'- cGCGCACgaggUGCGCgugauugccuCGCCGGAacUGGa- -3'
miRNA:   3'- -CGCGUGa---ACGCGac--------GCGGUCU--AUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.