miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6762 5' -55.6 NC_001875.2 + 131257 0.66 0.864096
Target:  5'- gUGCGGCAGuuGUGCGacgcguUGaACGACUUg -3'
miRNA:   3'- aACGUUGUCggCGCGC------ACcUGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 111038 0.66 0.864096
Target:  5'- cUGCGACGacGCCcgcgcacuGCGCGUcGACGGCUUc -3'
miRNA:   3'- aACGUUGU--CGG--------CGCGCAcCUGUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 91115 0.66 0.864096
Target:  5'- gUGCAGCAGCgucUGCGCGUccuuGACGuACUg -3'
miRNA:   3'- aACGUUGUCG---GCGCGCAc---CUGU-UGAa -5'
6762 5' -55.6 NC_001875.2 + 128008 0.66 0.856125
Target:  5'- -gGCuGCGGCCGCgccgGCGUGcgccGACGACg- -3'
miRNA:   3'- aaCGuUGUCGGCG----CGCAC----CUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 95140 0.66 0.847934
Target:  5'- -cGCcACGGCCG-GCGaucUGGACGAUUa -3'
miRNA:   3'- aaCGuUGUCGGCgCGC---ACCUGUUGAa -5'
6762 5' -55.6 NC_001875.2 + 62208 0.66 0.847934
Target:  5'- aUGCAuuggauGCCGCGCGacgaUGGACAGg-- -3'
miRNA:   3'- aACGUugu---CGGCGCGC----ACCUGUUgaa -5'
6762 5' -55.6 NC_001875.2 + 68566 0.66 0.847934
Target:  5'- -gGCGGCGGUCGCgcaccGCGUGGcGCcGCUg -3'
miRNA:   3'- aaCGUUGUCGGCG-----CGCACC-UGuUGAa -5'
6762 5' -55.6 NC_001875.2 + 18049 0.66 0.847934
Target:  5'- aUGCGACA--UGCGCGUggcGGACAACc- -3'
miRNA:   3'- aACGUUGUcgGCGCGCA---CCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 66304 0.66 0.847934
Target:  5'- aUGC-GCGGCCgGCgaguugaugGCGUGGGCGGCc- -3'
miRNA:   3'- aACGuUGUCGG-CG---------CGCACCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 114024 0.66 0.847103
Target:  5'- -cGCAugGCGGCCGCGCGguccagaUGG-UAGCa- -3'
miRNA:   3'- aaCGU--UGUCGGCGCGC-------ACCuGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 96046 0.66 0.842917
Target:  5'- -cGCGGCaAGCgCGUGCGcaccggcacgcacuaUGGACAACg- -3'
miRNA:   3'- aaCGUUG-UCG-GCGCGC---------------ACCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 119423 0.66 0.839531
Target:  5'- -cGCAACGGCCugcuugGCGCGcGGcaaACAGCg- -3'
miRNA:   3'- aaCGUUGUCGG------CGCGCaCC---UGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 104950 0.66 0.830924
Target:  5'- gUUGUAGCAGuuGCucGUGUGcGGCGGCg- -3'
miRNA:   3'- -AACGUUGUCggCG--CGCAC-CUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 11067 0.66 0.830924
Target:  5'- cUGCAGCAGUuuggcguggCGCGCGcccUGGACAcgGCc- -3'
miRNA:   3'- aACGUUGUCG---------GCGCGC---ACCUGU--UGaa -5'
6762 5' -55.6 NC_001875.2 + 110580 0.66 0.830924
Target:  5'- -cGUAGCcgcGCCGCGCGcgcgccUGGAcCAGCUUc -3'
miRNA:   3'- aaCGUUGu--CGGCGCGC------ACCU-GUUGAA- -5'
6762 5' -55.6 NC_001875.2 + 50480 0.66 0.830924
Target:  5'- -aGCGacGCGGCCgGCGCGUGcGcGCGGCa- -3'
miRNA:   3'- aaCGU--UGUCGG-CGCGCAC-C-UGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 78408 0.66 0.830924
Target:  5'- cUGCAcgcGCuGGCCguguGCGCGcUGGGCAACa- -3'
miRNA:   3'- aACGU---UG-UCGG----CGCGC-ACCUGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 3850 0.66 0.830924
Target:  5'- -aGCAGCAGCagguuCGUGUGGcACGGCa- -3'
miRNA:   3'- aaCGUUGUCGgc---GCGCACC-UGUUGaa -5'
6762 5' -55.6 NC_001875.2 + 3207 0.66 0.822121
Target:  5'- gUUGCGGCGGCgGUuggaugGCGUGGGCGc--- -3'
miRNA:   3'- -AACGUUGUCGgCG------CGCACCUGUugaa -5'
6762 5' -55.6 NC_001875.2 + 99058 0.67 0.81313
Target:  5'- -cGCGGCGcccgcccacGCCGCGCGaGGACGcGCUc -3'
miRNA:   3'- aaCGUUGU---------CGGCGCGCaCCUGU-UGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.